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ClCG05G009050 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G009050
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1
Genome locationCG_Chr05:9873583..9875795
RNA-Seq ExpressionClCG05G009050
SyntenyClCG05G009050
Gene Ontology termsGO:0042793 - plastid transcription (biological process)
GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR038958 - Protein plastid transcriptionally active 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050522.1 KH domain-containing protein [Cucumis melo var. makuwa]8.2e-8392.44Show/hide
Query:  RTAMSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLL
        RTAM+TPI TLSFASP LP +IE  PRIS A NF PPFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLL
Subjt:  RTAMSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLL

Query:  LSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        LSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  LSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

TYK11290.1 KH domain-containing protein [Cucumis melo var. makuwa]9.7e-7694.19Show/hide
Query:  LPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LP +IE  PRISSA NF PPFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

XP_004146231.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucumis sativus]2.5e-7989.94Show/hide
Query:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        M+TPI TLSFASP LP +IE  PRIS A NF PPFQ+VARKQ++GE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

XP_008455984.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucumis melo]3.5e-8192.31Show/hide
Query:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        M+TPI TLSFASP LP +IE  PRIS A NF PPFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

XP_038891427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Benincasa hispida]1.1e-8495.27Show/hide
Query:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        MSTPI TLSFASPLLPH+IEVKPRIS AFNF  PFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
Subjt:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPH+LK+E+T
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

TrEMBL top hitse value%identityAlignment
A0A0A0L9J8 Uncharacterized protein1.2e-7989.94Show/hide
Query:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        M+TPI TLSFASP LP +IE  PRIS A NF PPFQ+VARKQ++GE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

A0A1S3C3E7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X11.7e-8192.31Show/hide
Query:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE
        M+TPI TLSFASP LP +IE  PRIS A NF PPFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

A0A1S4E109 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X21.8e-7593.55Show/hide
Query:  LPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LP +IE  PRIS A NF PPFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

A0A5A7U3Y9 KH domain-containing protein4.0e-8392.44Show/hide
Query:  RTAMSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLL
        RTAM+TPI TLSFASP LP +IE  PRIS A NF PPFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLL
Subjt:  RTAMSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLL

Query:  LSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        LSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  LSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

A0A5D3CIV3 KH domain-containing protein4.7e-7694.19Show/hide
Query:  LPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LP +IE  PRISSA NF PPFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLK+EFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT

SwissProt top hitse value%identityAlignment
Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 71.2e-4774.19Show/hide
Query:  EGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGF
        + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF
Subjt:  EGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGF

Query:  YRPDAYAEDDPFKPGPHYLKEEFT
         RP+AY E DP+KPGP YL E +T
Subjt:  YRPDAYAEDDPFKPGPHYLKEEFT

Arabidopsis top hitse value%identityAlignment
AT5G24314.1 plastid transcriptionally active78.3e-4974.19Show/hide
Query:  EGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGF
        + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF
Subjt:  EGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGF

Query:  YRPDAYAEDDPFKPGPHYLKEEFT
         RP+AY E DP+KPGP YL E +T
Subjt:  YRPDAYAEDDPFKPGPHYLKEEFT

AT5G24314.2 plastid transcriptionally active71.3e-4669.7Show/hide
Query:  EGSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLS
        + +GRRVWRRR         LTKKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLS
Subjt:  EGSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLS

Query:  NRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
        NRVND GF RP+AY E DP+KPGP YL E +T
Subjt:  NRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTGTTTAATAGTATCATCCGAAAATGAAGATAGAACAGCGATGAGTACTCCAATCCCAACACTCTCCTTTGCTTCGCCTTTGTTGCCGCACAAGATTGAGGT
GAAGCCCCGAATTTCTTCTGCCTTTAACTTTCATCCTCCGTTTCAGGTGGTCGCTAGAAAACAGAGAAATGGTGAAGGTAGTGGTCGGCGAGTGTGGCGACGAAGAAAAT
TGACGAAGAAAGATGACATGTCGATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTCAAGGAACAGGGTAAGCTCATAACAATGGACATTGAA
AGACTATTATTATCAGAGGACAACCGCTTCGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAAAGC
CATTCTTCACGTTCTTAGCAACCGAGTGAATGATGCAGGGTTTTATCGGCCAGATGCTTATGCAGAAGACGACCCATTTAAACCCGGACCTCACTATCTTAAAGAAGAAT
TTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTTGTTTAATAGTATCATCCGAAAATGAAGATAGAACAGCGATGAGTACTCCAATCCCAACACTCTCCTTTGCTTCGCCTTTGTTGCCGCACAAGATTGAGGT
GAAGCCCCGAATTTCTTCTGCCTTTAACTTTCATCCTCCGTTTCAGGTGGTCGCTAGAAAACAGAGAAATGGTGAAGGTAGTGGTCGGCGAGTGTGGCGACGAAGAAAAT
TGACGAAGAAAGATGACATGTCGATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTCAAGGAACAGGGTAAGCTCATAACAATGGACATTGAA
AGACTATTATTATCAGAGGACAACCGCTTCGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAAAGC
CATTCTTCACGTTCTTAGCAACCGAGTGAATGATGCAGGGTTTTATCGGCCAGATGCTTATGCAGAAGACGACCCATTTAAACCCGGACCTCACTATCTTAAAGAAGAAT
TTACTTGAAGAAGCTGATGACAAAATCCATTTTGTTATACAAAGACTGTCAGTGTATTAATCTGGTTTTTCCAGTTTTTAAATGTTAGCTAGTCCCTATTTCTCTTCAAT
TTAAGAATTTTGCTTTCCTCATGAGCTTTTTTCTTACCAATTATACCTCTTAAACTGCTACTTCTATTCGTTCTATTTCATCCAACATCCCCGAAAGAGGGAGG
Protein sequenceShow/hide protein sequence
MEVCLIVSSENEDRTAMSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIE
RLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT