CuGenDBv2

Gene ID	ClCG05G009580
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S ribosomal protein L39
Genome location	CG_Chr05:10573486..10574351
RNA-Seq Expression	ClCG05G009580
Synteny	ClCG05G009580
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF9662792.1 hypothetical protein SADUNF_Sadunf18G0091200 [Salix dunnii]

4.5e-19

90.57

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLGARF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAK+RHWRRTKLG R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLGARF

KAG5006585.1 hypothetical protein JHK85_025127 [Glycine max]

7.6e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

NP_001105473.1 60S ribosomal protein L39 [Zea mays]

7.6e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

RZC15298.1 60S ribosomal protein L39 [Glycine soja]

7.6e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

XP_038993743.1 60S ribosomal protein L39-like [Hibiscus syriacus]

7.6e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

TrEMBL top hits

e value

%identity

Alignment

A0A0B0P1M9 60S ribosomal L39

3.7e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

A0A1S3U3K8 60S ribosomal protein L39

3.7e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

A0A5D2BQR0 Uncharacterized protein

3.7e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

A0A5J5NF08 Uncharacterized protein

3.7e-19

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

A0A6N2MQM2 Uncharacterized protein

5.7e-20

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Query:  PSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLGARFLNFLLLNQ
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAK+RHWRRTKLG  FLN   LN+
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLGARFLNFLLLNQ

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

9.3e-20

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

P51425 60S ribosomal protein L39

1.0e-21

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

P51426 60S ribosomal protein L39-2

1.0e-21

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

Q5SMI4 60S ribosomal protein L39-3

2.9e-21

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTF+IKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

Q6KAJ8 60S ribosomal protein L39-1

1.0e-21

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

5.8e-17

92.86

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Query:  IKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        IKKKL KKMRQNRPIP+WIRLRTDNTIRYNAK+RHWRRTKLG
Subjt:  IKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

AT3G02190.1 Ribosomal protein L39 family protein

9.6e-20

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHK+F IKKKL KKMRQNRPIP WIRLRTDN IRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

AT4G31985.1 Ribosomal protein L39 family protein

6.6e-21

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDNTIRYNAK+RHWRRTKLG
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG

Sequences

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CDS sequence

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ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTATTGGATCCGTCTTAGGACCGACAATACCATCAGGTA
CAATGCGAAGCAAAGGCACTGGCGCCGCACTAAGCTCGGAGCTAGATTTCTGAATTTTTTGCTTCTCAATCAAGAAGTTCAAAAAGTAAATTTTGTAAGAGGTCTCCCAG
CTAGTTTTTCAAGCAACTACCGCCACAAAAAACAAGTTTCAGAAAGGGATTCGGATGGAGATTCATTAGCAAATGCTAGCAGTGAAGAGATAGAAAATTTTGAATCAAAG
GAATTTCACAAGGAAGAAGAGCAAGATGATGGAAGAGGCTTGGAAGCATCTTTGGAAGCATCTCTAGTCGGATGGATTATATCATATGTTTGGAAGAATTTGCAGGTTGG
AGGGCCCGTTTGGTCCTGTTGGGATTCTACTATTGCTGTTTATCCTAGTCCTTTGCTGATTTCCTAA

mRNA sequence

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Protein sequence

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MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLGARFLNFLLLNQEVQKVNFVRGLPASFSSNYRHKKQVSERDSDGDSLANASSEEIENFESK
EFHKEEEQDDGRGLEASLEASLVGWIISYVWKNLQVGGPVWSCWDSTIAVYPSPLLIS

ClCG05G009580 (gene) of Watermelon (Charleston Gray) v2.5 genome