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ClCG05G010680 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G010680
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCG_Chr05:12080516..12081243
RNA-Seq ExpressionClCG05G010680
SyntenyClCG05G010680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046650.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0750Show/hide
Query:  TYSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFW
        TY+G +P   KH++ KAPW SI K  NW + N++W++NNG+ +SFW
Subjt:  TYSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFW
KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0754.35Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        + G +P+N   +S KAPWRSII + +WFK+NH W +NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
TYK03140.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-0754.35Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        Y G +P+N   +S KAPWRSII + +WFK+N  W +NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
TYK11012.1 uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]3.7e-0752.17Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        + G +P+N   +S KAPWRSII + +WFK+N  W +NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
XP_008446987.1 PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo]3.7e-0752.17Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        Y G +P+N   ++ KAPWRSII + +WFK+N  W++NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
TrEMBL top hitse value%identityAlignment
A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein7.9e-0854.35Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        + G +P+N   +S KAPWRSII + +WFK+NH W +NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
A0A5A7UV84 Reverse transcriptase domain-containing protein1.8e-0752.17Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        + G +P+N   +S KAPWRSII + +WFK+N  W +NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
A0A5D3BVM7 LINE-1 retrotransposable element ORF2 protein1.4e-0754.35Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        Y G +P+N   +S KAPWRSII + +WFK+N  W +NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
A0A5D3C104 LINE-1 retrotransposable element ORF2 protein1.8e-0752.17Show/hide
Query:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
        Y G +P+N   ++ KAPWRSII + +WFK+N  W++NNGD++SFW+
Subjt:  YSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFWH
A0A5D3D3C6 LINE-1 retrotransposable element ORF2 protein7.9e-0850Show/hide
Query:  TYSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFW
        TY+G +P   KH++ KAPW SI K  NW + N++W++NNG+ +SFW
Subjt:  TYSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRVSFW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTGATGAACAATTAGAAAGCCTCTTCAATTCTTTAAGGTCCTTTGAGCTACCTGGTCTTAATATCAATCTTAGCAAATCTATCATATTTGGCATTAATCCTCTAAATTT
AAAGGTGGCCAAATCTTGCTCTTTTAAGCAAATGGCTTTGGAGATTTATTTCGGAAGGCAATTCTCTATGGAAAAGGATCATAATTGCCAAACCTACAGTGGAGCAATGC
CGACCAATGGTAAACACAACAGCATGAAGGCTCCATGGAGATCCATTATCAAAAGCTTCAATTGGTTTAAAGCCAACCATGAGTGGAAGATTAACAATGGTGACAGAGTC
TCTTTTTGGCATGGTAAATGCCACAATCAT
mRNA sequenceShow/hide mRNA sequence
AGTGATGAACAATTAGAAAGCCTCTTCAATTCTTTAAGGTCCTTTGAGCTACCTGGTCTTAATATCAATCTTAGCAAATCTATCATATTTGGCATTAATCCTCTAAATTT
AAAGGTGGCCAAATCTTGCTCTTTTAAGCAAATGGCTTTGGAGATTTATTTCGGAAGGCAATTCTCTATGGAAAAGGATCATAATTGCCAAACCTACAGTGGAGCAATGC
CGACCAATGGTAAACACAACAGCATGAAGGCTCCATGGAGATCCATTATCAAAAGCTTCAATTGGTTTAAAGCCAACCATGAGTGGAAGATTAACAATGGTGACAGAGTC
TCTTTTTGGCATGGTAAATGCCACAATCAT
Protein sequenceShow/hide protein sequence
SDEQLESLFNSLRSFELPGLNINLSKSIIFGINPLNLKVAKSCSFKQMALEIYFGRQFSMEKDHNCQTYSGAMPTNGKHNSMKAPWRSIIKSFNWFKANHEWKINNGDRV
SFWHGKCHNH