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ClCG05G010960 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G010960
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCG_Chr05:12644783..12645325
RNA-Seq ExpressionClCG05G010960
SyntenyClCG05G010960
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060761.1 formin-like protein 3 [Cucumis melo var. makuwa]1.6e-5174.83Show/hide
Query:  MAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL----PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTG
        M  SAAILLS  F    +LL H+QTSS     PQNPDAEIKCGSCPCSNPC+QQL    PPPPPP PCTPT+ SRPPPPRFIYT SS  PPPPRF YTTG
Subjt:  MAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL----PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTG

Query:  IPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW
        +PG+LY++DANN WYYFSGTTG RP MAAVVVALGCG LHLMGF KW
Subjt:  IPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

KAE8650628.1 hypothetical protein Csa_011452 [Cucumis sativus]6.4e-4870.47Show/hide
Query:  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL-------PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRF
        +KMAP AAILLS  F    +LL ++QTSS     PQNPDAEIKCGSCPCSNPC+QQL       PPPPPP PCTPT+ SRPPPPRFIYT+SS  PPPPRF
Subjt:  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL-------PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRF

Query:  IYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGF
         YTTG+PG+LY++DANN WYYFSGT   RP MAAV VA+GCG LHLMGF
Subjt:  IYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGF

KAG7017949.1 hypothetical protein SDJN02_19815, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-4771.63Show/hide
Query:  MAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLY
        MAPSAAI LSL F  L +H   S       PQ+P++EIKCGSCPCSNPCV+Q PPPPPPP C P LP  PPPPRFIYT S SPPPPPRFIYTTG+PG+LY
Subjt:  MAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLY

Query:  QVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW
        Q+DANN WYYFSGTT  +PA AA+VVALGCG L+LM FGKW
Subjt:  QVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

XP_011651408.1 leucine-rich repeat extensin-like protein 3 [Cucumis sativus]8.9e-5070.39Show/hide
Query:  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL-------PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRF
        +KMAP AAILLS  F    +LL ++QTSS     PQNPDAEIKCGSCPCSNPC+QQL       PPPPPP PCTPT+ SRPPPPRFIYT+SS  PPPPRF
Subjt:  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL-------PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRF

Query:  IYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW
         YTTG+PG+LY++DANN WYYFSGT   RP MAAV VA+GCG LHLMGF KW
Subjt:  IYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

XP_023528316.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]4.1e-4769.86Show/hide
Query:  LKMAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPP---CTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGI
        +KMAPSAAI LSL F  L +H   S       PQ+P++EIKCGSCPCSNPCV+Q PPPPPPPP   C P LP  PPPPRFIYT + SPPPPPRFIYTTG+
Subjt:  LKMAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPP---CTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGI

Query:  PGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW
        PG+LYQ+DANN WYYFSGTT  RPA A +VVALGCG L+LM FGKW
Subjt:  PGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

TrEMBL top hitse value%identityAlignment
A0A0A0L7R0 Uncharacterized protein4.3e-5070.39Show/hide
Query:  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL-------PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRF
        +KMAP AAILLS  F    +LL ++QTSS     PQNPDAEIKCGSCPCSNPC+QQL       PPPPPP PCTPT+ SRPPPPRFIYT+SS  PPPPRF
Subjt:  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL-------PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRF

Query:  IYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW
         YTTG+PG+LY++DANN WYYFSGT   RP MAAV VA+GCG LHLMGF KW
Subjt:  IYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

A0A5A7V4T2 Formin-like protein 37.9e-5274.83Show/hide
Query:  MAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL----PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTG
        M  SAAILLS  F    +LL H+QTSS     PQNPDAEIKCGSCPCSNPC+QQL    PPPPPP PCTPT+ SRPPPPRFIYT SS  PPPPRF YTTG
Subjt:  MAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQL----PPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTG

Query:  IPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW
        +PG+LY++DANN WYYFSGTTG RP MAAVVVALGCG LHLMGF KW
Subjt:  IPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

A0A6J1GAW3 leucine-rich repeat extensin-like protein 28.5e-3063.38Show/hide
Query:  MAPSAAILLSLPFFILLVHAQTS-----SPQNPDAEIKCGSCP-CSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLY
        MAPSAAI LSL    LL   QTS     SP +PD EI C S   CSNP VQQL P PP PP  P L    PPPRF YT+ SSPPPP RFIYTTG+P DLY
Subjt:  MAPSAAILLSLPFFILLVHAQTS-----SPQNPDAEIKCGSCP-CSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLY

Query:  QVDANNHWYYFSGTTGKRPAMAA-VVVALGCGTLHLMGFGKW
        Q D  N WYYFSG  GK PAMAA VVV L CG L L+ FGKW
Subjt:  QVDANNHWYYFSGTTGKRPAMAA-VVVALGCGTLHLMGFGKW

A0A6J1J7W0 probable pathogenesis-related protein ARB_028616.5e-4670.63Show/hide
Query:  MAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPP--CTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGD
        MAPSAAI LSL F  L +H   S       PQ+P++EIKCGSCPCSNPCV+Q PPPPPPPP  C P LP  PPPPRFIYT S SPPPPPRFIYTTG+PG+
Subjt:  MAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPP--CTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGD

Query:  LYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW
        LYQ+DANN WYYFSGTT    A AA+VVALGCG L+LM FGKW
Subjt:  LYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

A0A6J1KHA8 leucine-rich repeat extensin-like protein 36.7e-1962.86Show/hide
Query:  MAPSAAILLSLPF-FILLVHAQTSSPQNPDAEIKCGS-CPCSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLYQVDA
        MAPSAAI LSL   FI       +SP +P AEI CGS  PCSNP VQQL P PP PP  P L    PPPRF YT+ SSPPPPP+FIYTTG+P DLYQ D 
Subjt:  MAPSAAILLSLPF-FILLVHAQTSSPQNPDAEIKCGS-CPCSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLYQVDA

Query:  NNHWY
         N WY
Subjt:  NNHWY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein6.0e-0436.27Show/hide
Query:  AAILLSLPFFILLVHAQTSSPQNPDAEIKCGSCPCSNPCVQQLPPP---PPPPPCTPT-LPSRPPPPRFIYTSSS-----SPPPPPRFIYTTGIPGDLYQ
        A ++L+ P   ++++A+ SS    + ++ C       PC+Q  PPP   PPPP CTP+  P  PPPP+      S      PPPPP +++T   PGDLY 
Subjt:  AAILLSLPFFILLVHAQTSSPQNPDAEIKCGSCPCSNPCVQQLPPP---PPPPPCTPT-LPSRPPPPRFIYTSSS-----SPPPPPRFIYTTGIPGDLYQ

Query:  VD
        ++
Subjt:  VD

AT1G23040.1 hydroxyproline-rich glycoprotein family protein1.5e-0742.05Show/hide
Query:  LVHAQTSSPQNPDAE-------IKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLYQVD
        L++  +SS  + +A        IKC      NP     PPP PPPP  P  P+ PPPP    +S   PPPP  F+Y TG PG+LY VD
Subjt:  LVHAQTSSPQNPDAE-------IKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLYQVD

AT1G70990.1 proline-rich family protein1.4e-0533.33Show/hide
Query:  AQHLTSTLIPFLSKTQSSSISELLLYLKMAPSAAILLSLPFFILLVHAQTSSPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSR----PPPPR
        ++H+T+  +P  ++   +  + LL       +  + L+ P  I    + T+     D  IKC       PC+Q +PPP PPPP +P  PS+    PP P 
Subjt:  AQHLTSTLIPFLSKTQSSSISELLLYLKMAPSAAILLSLPFFILLVHAQTSSPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSR----PPPPR

Query:  FIYTSSSSPPPPPRFIYTTGIPGDLYQVD
             S  PPPP  +IY TG PG+LY +D
Subjt:  FIYTSSSSPPPPPRFIYTTGIPGDLYQVD

AT3G03350.1 NAD(P)-binding Rossmann-fold superfamily protein3.1e-0855.1Show/hide
Query:  TLPSRPPPPRFIYTS-SSSPPPPPRFIYTTGIPGDLYQVDANNHWYYFS
        T P RPPPPR  Y S SSS PPPP+++Y TG+PG+LY+ + ++ W Y S
Subjt:  TLPSRPPPPRFIYTS-SSSPPPPPRFIYTTGIPGDLYQVDANNHWYYFS

AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein4.3e-1043.66Show/hide
Query:  TLPSRPPPPRFIYTS-SSSPPPPPRFIYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLH
        T P RPPPPR  Y S SSS PPPP+++Y TG+PG+LY+ + ++ W Y S           V+V +G G ++
Subjt:  TLPSRPPPPRFIYTS-SSSPPPPPRFIYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTCCCCTTCCCACTATCCCCATACACTCAACATAAGCAAATAACAGCCCAACACTTGACCTCCACATTAATTCCCTTTCTCTCCAAAACTCAATCCTCATCGAT
TTCAGAGCTCCTCCTCTACCTGAAAATGGCGCCTTCCGCCGCCATTTTACTCTCTCTTCCTTTCTTCATCCTGTTGGTCCACGCCCAAACCTCCTCTCCACAAAATCCCG
ACGCTGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCGCCGCCGCCACCTCCTCCTCCTTGTACCCCAACTCTGCCGTCTCGACCACCG
CCTCCTAGGTTTATTTATACATCATCGTCGTCTCCACCACCACCTCCAAGGTTTATTTATACTACCGGCATTCCCGGTGACCTCTACCAGGTCGATGCGAATAATCATTG
GTATTACTTCTCCGGCACGACGGGGAAGCGGCCGGCCATGGCAGCGGTTGTGGTGGCGCTTGGCTGTGGAACTTTGCATCTCATGGGGTTTGGTAAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTCCCCTTCCCACTATCCCCATACACTCAACATAAGCAAATAACAGCCCAACACTTGACCTCCACATTAATTCCCTTTCTCTCCAAAACTCAATCCTCATCGAT
TTCAGAGCTCCTCCTCTACCTGAAAATGGCGCCTTCCGCCGCCATTTTACTCTCTCTTCCTTTCTTCATCCTGTTGGTCCACGCCCAAACCTCCTCTCCACAAAATCCCG
ACGCTGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCGCCGCCGCCACCTCCTCCTCCTTGTACCCCAACTCTGCCGTCTCGACCACCG
CCTCCTAGGTTTATTTATACATCATCGTCGTCTCCACCACCACCTCCAAGGTTTATTTATACTACCGGCATTCCCGGTGACCTCTACCAGGTCGATGCGAATAATCATTG
GTATTACTTCTCCGGCACGACGGGGAAGCGGCCGGCCATGGCAGCGGTTGTGGTGGCGCTTGGCTGTGGAACTTTGCATCTCATGGGGTTTGGTAAGTGGTGA
Protein sequenceShow/hide protein sequence
MAFPFPLSPYTQHKQITAQHLTSTLIPFLSKTQSSSISELLLYLKMAPSAAILLSLPFFILLVHAQTSSPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSRPP
PPRFIYTSSSSPPPPPRFIYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW