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ClCG05G011185 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G011185
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCG_Chr05:13087376..13088342
RNA-Seq ExpressionClCG05G011185
SyntenyClCG05G011185
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032344.1 uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa]5.0e-3459.57Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH RGHIL+N P + PR   Y T++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSR
        +  A+ ++ + L  QISDLQ LL QLISS+S AL VS G+R
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSR

KAA0058547.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]8.8e-3958.75Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD  IQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y T++KN TKPR S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
         ++     N  +P   QISDLQ LL QLISS+S AL VS GS S D  D+W   QSGKIV
Subjt:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]3.1e-3651.55Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD A+QEI FEEK +GI+ S  S+V L +TH    + T FCKN  + GHKF++CP IECRYCH RGHILDN P + PR PG+  K K S K   S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
         ++  A+S+D   P S Q++DL DLLKQ+ISS S AL V+PGS  +D   +W   + G I+
Subjt:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV

XP_016903357.1 PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo]7.4e-3858.23Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL +T+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y  ++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
        I   S N  +P   QISDLQ LL  LISS+S AL VSP S   D  D+W   QSGKIV
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]5.3e-3650.93Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD AIQEI FEE  +GI+ S  S+V L +THS + + + FCKN  + GHKF++CP IECRYCH RGHILDN P + PR PG P K K+STK    
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
         I+  A+ +D  +P + Q++DL DLLKQ+ISS S AL V+PGS  ++   +W+  + G I+
Subjt:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV

TrEMBL top hitse value%identityAlignment
A0A1S3B566 uncharacterized protein LOC1034859232.4e-3459.57Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH RGHIL+N P + PR   Y T++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSR
        +  A+ ++ + L  QISDLQ LL QLISS+S AL VS G+R
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSR

A0A1S3BBA1 uncharacterized protein LOC1034882001.5e-3651.55Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD A+QEI FEEK +GI+ S  S+V L +TH    + T FCKN  + GHKF++CP IECRYCH RGHILDN P + PR PG+  K K S K   S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
         ++  A+S+D   P S Q++DL DLLKQ+ISS S AL V+PGS  +D   +W   + G I+
Subjt:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV

A0A1S4E559 uncharacterized protein LOC1079921403.6e-3858.23Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL +T+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y  ++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
        I   S N  +P   QISDLQ LL  LISS+S AL VSP S   D  D+W   QSGKIV
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV

A0A5A7SMD6 Uncharacterized protein2.4e-3459.57Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH RGHIL+N P + PR   Y T++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSR
        +  A+ ++ + L  QISDLQ LL QLISS+S AL VS G+R
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSR

A0A5A7UUZ4 Zinc finger, CCHC-type4.3e-3958.75Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD  IQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y T++KN TKPR S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV
         ++     N  +P   QISDLQ LL QLISS+S AL VS GS S D  D+W   QSGKIV
Subjt:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGTTTGTGCTACTATGCTACACTTGCAATCGTTTATCGTCTTTGGATGTGGCAATTCAAGAAATCTTCTTTGAGGAGAAACATGTGGGTATCATCCCCTCCAA
GCAGTCTGAAGTCGTTCTTGTGAGCACTCACTCAACTAATATGTCCTGGACTACTTTCTGTAAAAACTATAATATCTTTGGTCATAAGTTTAGTGACTGTCCAAAAATTG
AGTGCAGGTACTGCCACAATCGAGGTCATATTTTAGACAATTATCCCCCACAATCACCTCGACTTCCAGGTTATCCTACCAAGTCCAAAAACTCTACTAAACCGAGGTTG
TCCTTAATCATTATTGATGCCTCCTCTAATGATGACTCTCCTCTCAGTCGTCAGATAAGTGATCTTCAAGACTTGTTAAAGCAACTAATTTCTTCCACTTCTTTTGCTCT
TGTCGTATCCCCAGGTTCAAGATCCACAGATGAAATAGACAATTGGTTCAAGTTGCAAAGTGGGAAGATTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGTTTGTGCTACTATGCTACACTTGCAATCGTTTATCGTCTTTGGATGTGGCAATTCAAGAAATCTTCTTTGAGGAGAAACATGTGGGTATCATCCCCTCCAA
GCAGTCTGAAGTCGTTCTTGTGAGCACTCACTCAACTAATATGTCCTGGACTACTTTCTGTAAAAACTATAATATCTTTGGTCATAAGTTTAGTGACTGTCCAAAAATTG
AGTGCAGGTACTGCCACAATCGAGGTCATATTTTAGACAATTATCCCCCACAATCACCTCGACTTCCAGGTTATCCTACCAAGTCCAAAAACTCTACTAAACCGAGGTTG
TCCTTAATCATTATTGATGCCTCCTCTAATGATGACTCTCCTCTCAGTCGTCAGATAAGTGATCTTCAAGACTTGTTAAAGCAACTAATTTCTTCCACTTCTTTTGCTCT
TGTCGTATCCCCAGGTTCAAGATCCACAGATGAAATAGACAATTGGTTCAAGTTGCAAAGTGGGAAGATTGTTTGAACTCACATCTCTTCACCTTCCTGATCATTCGTCC
ATTTCTGCATCTGTCACTGACTTTGATACATATAAGTGGCATCTCTGTCTGAGTCATGCTTCTTTTAAAAAACTTTGTCATTTAATTTATATTGAAAATCTAAGTAATTT
TACAAAATTTGTCCATTTTCATTGTTTGAATTGCTGAAAAG
Protein sequenceShow/hide protein sequence
MNLFVLLCYTCNRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRL
SLIIIDASSNDDSPLSRQISDLQDLLKQLISSTSFALVVSPGSRSTDEIDNWFKLQSGKIV