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ClCG05G011440 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G011440
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionIntegrase core domain containing protein
Genome locationCG_Chr05:13629935..13630419
RNA-Seq ExpressionClCG05G011440
SyntenyClCG05G011440
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]9.2e-0630.58Show/hide
Query:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN
        +  ++  T  T EG  ++  + + I   + NP   +WVT D LL+GWLYNSMTP +A Q+M F+ V                                L+
Subjt:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN

Query:  EEYNPMVGVVQGKLGVNWTDL
        E YN ++ V+QGK  ++W D+
Subjt:  EEYNPMVGVVQGKLGVNWTDL

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]9.2e-0630.58Show/hide
Query:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN
        +  ++  T  T EG  ++  + + I   + NP   +WVT D LL+GWLYNSMTP +A Q+M F+ V                                L+
Subjt:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN

Query:  EEYNPMVGVVQGKLGVNWTDL
        E YN ++ V+QGK  ++W D+
Subjt:  EEYNPMVGVVQGKLGVNWTDL

XP_016902205.1 PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]9.2e-0630.58Show/hide
Query:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN
        +  ++  T  T EG  ++  + + I   + NP   +WVT D LL+GWLYNSMTP +A Q+M F+ V                                L+
Subjt:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN

Query:  EEYNPMVGVVQGKLGVNWTDL
        E YN ++ V+QGK  ++W D+
Subjt:  EEYNPMVGVVQGKLGVNWTDL

XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]2.9e-0730Show/hide
Query:  MIKQIETNNKETVSTREGSSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRF-----------------------------------
        M  Q    N ET  T   S+  S +I  E   NP    WVT D+LL+GWLYNSMTP++ATQVM +                                   
Subjt:  MIKQIETNNKETVSTREGSSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRF-----------------------------------

Query:  -------------------------------SQVLSSLNEEYNPMVGVVQGKLGVNWTDL
                                       SQVL  L+EEYNP+V  +QGK G++W ++
Subjt:  -------------------------------SQVLSSLNEEYNPMVGVVQGKLGVNWTDL

XP_038887688.1 protein transport protein sec-16A.1-like [Benincasa hispida]1.4e-0634.29Show/hide
Query:  SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMR-----------------------------FSQVLSSLNEEYNPMVGVVQGKLGV
        + + S T++ E   N +   W+ +D+LL+GWLYNSMTP++  QVMR                              SQVL  L+EEYN +V  +Q K  V
Subjt:  SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMR-----------------------------FSQVLSSLNEEYNPMVGVVQGKLGV

Query:  NWTDL
        +W D+
Subjt:  NWTDL

TrEMBL top hitse value%identityAlignment
A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X14.5e-0630.58Show/hide
Query:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN
        +  ++  T  T EG  ++  + + I   + NP   +WVT D LL+GWLYNSMTP +A Q+M F+ V                                L+
Subjt:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN

Query:  EEYNPMVGVVQGKLGVNWTDL
        E YN ++ V+QGK  ++W D+
Subjt:  EEYNPMVGVVQGKLGVNWTDL

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X44.5e-0630.58Show/hide
Query:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN
        +  ++  T  T EG  ++  + + I   + NP   +WVT D LL+GWLYNSMTP +A Q+M F+ V                                L+
Subjt:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN

Query:  EEYNPMVGVVQGKLGVNWTDL
        E YN ++ V+QGK  ++W D+
Subjt:  EEYNPMVGVVQGKLGVNWTDL

A0A1S4E1V2 uncharacterized protein LOC107991581 isoform X34.5e-0630.58Show/hide
Query:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN
        +  ++  T  T EG  ++  + + I   + NP   +WVT D LL+GWLYNSMTP +A Q+M F+ V                                L+
Subjt:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN

Query:  EEYNPMVGVVQGKLGVNWTDL
        E YN ++ V+QGK  ++W D+
Subjt:  EEYNPMVGVVQGKLGVNWTDL

A0A1S4E2K3 uncharacterized protein LOC107991581 isoform X54.5e-0630.58Show/hide
Query:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN
        +  ++  T  T EG  ++  + + I   + NP   +WVT D LL+GWLYNSMTP +A Q+M F+ V                                L+
Subjt:  IETNNKETVSTREG--SSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQV-----------------------------LSSLN

Query:  EEYNPMVGVVQGKLGVNWTDL
        E YN ++ V+QGK  ++W D+
Subjt:  EEYNPMVGVVQGKLGVNWTDL

A0A6J1D5J0 uncharacterized protein LOC1110175011.4e-0730Show/hide
Query:  MIKQIETNNKETVSTREGSSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRF-----------------------------------
        M  Q    N ET  T   S+  S +I  E   NP    WVT D+LL+GWLYNSMTP++ATQVM +                                   
Subjt:  MIKQIETNNKETVSTREGSSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRF-----------------------------------

Query:  -------------------------------SQVLSSLNEEYNPMVGVVQGKLGVNWTDL
                                       SQVL  L+EEYNP+V  +QGK G++W ++
Subjt:  -------------------------------SQVLSSLNEEYNPMVGVVQGKLGVNWTDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAGCAAATTGAAACCAACAACAAGGAGACTGTAAGCACTAGAGAAGGTTCAAGCACTGATTCCCCAACTATTATACTGGAAGAAGTATCAAATCCAGAGAATGG
AAGGTGGGTCACCATTGATAAACTCCTAGTTGGTTGGCTCTACAACTCAATGACTCCTAAAATAGCCACTCAAGTGATGAGATTTTCACAAGTTCTCTCTAGCCTCAATG
AAGAATATAACCCTATGGTGGGGGTTGTCCAAGGCAAACTAGGAGTGAATTGGACAGATCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAAGCAAATTGAAACCAACAACAAGGAGACTGTAAGCACTAGAGAAGGTTCAAGCACTGATTCCCCAACTATTATACTGGAAGAAGTATCAAATCCAGAGAATGG
AAGGTGGGTCACCATTGATAAACTCCTAGTTGGTTGGCTCTACAACTCAATGACTCCTAAAATAGCCACTCAAGTGATGAGATTTTCACAAGTTCTCTCTAGCCTCAATG
AAGAATATAACCCTATGGTGGGGGTTGTCCAAGGCAAACTAGGAGTGAATTGGACAGATCTATAG
Protein sequenceShow/hide protein sequence
MIKQIETNNKETVSTREGSSTDSPTIILEEVSNPENGRWVTIDKLLVGWLYNSMTPKIATQVMRFSQVLSSLNEEYNPMVGVVQGKLGVNWTDL