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ClCG05G011555 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G011555
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr05:13852025..13858131
RNA-Seq ExpressionClCG05G011555
SyntenyClCG05G011555
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038877407.1 uncharacterized protein LOC120069696 [Benincasa hispida]1.7e-4049.78Show/hide
Query:  AELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML----------------------------------
        A+L+E LLYLV+IGWRS  G F       L +    K P  ALN+NTIECKVRSLKKQYNA+SEML                                  
Subjt:  AELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML----------------------------------

Query:  -----------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEKYELEFKRRKE
                               ES LNQD +DEEP EQS GR + P ESSR SKRKR SFQ EMIDIMR  +EM +THMGRLAS QK+KYELEF R+KE
Subjt:  -----------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEKYELEFKRRKE

Query:  VVNTIYNIDGLNEDDQLRLFDVGSVEI
        VVN IYNIDGL+ED Q+ L D+   +I
Subjt:  VVNTIYNIDGLNEDDQLRLFDVGSVEI

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]3.2e-5557.33Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------------
        +EDA LVEALLYLVE GWRS+NGTFRPGYLQHLEQILHEKVP CALNKNTIECKVRSLKKQYNAVSEML                               
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------------

Query:  ---------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK
                                         ESPLNQD +DEEP EQS GRA+ P ESSR SKRKR SFQ EMIDI++  +EMQ+THMGRLAS Q EK
Subjt:  ---------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK

Query:  YELEFKRRKEVVNTIYNIDGLNEDDQLRLFDV
        YELE    KEVVN IYNID L E+DQ+ L D+
Subjt:  YELEFKRRKEVVNTIYNIDGLNEDDQLRLFDV

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]6.4e-3550.52Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------------
        +EDA+LVEALLYLVE GWR +NGTFRPGYLQHLEQILHEKVP CALN NTIECKVRSLKKQYNAVSEML                               
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------------

Query:  --------------------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAI
                                                    ESPLNQD +DEEP EQS GRA+ PAESSR +KR R SFQ EMIDIMR  +
Subjt:  --------------------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAI

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]3.4e-3651.23Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------ESPLNQ
        +EDA+ VEALLYLV+ GWRS+NGTFR  YLQHLE+I HEKV  CALN+NTIECKVRSLKKQ NAVSEML                          S  N 
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------ESPLNQ

Query:  DGMDEEPVEQSIGRAT-------PAESSRCSKRKRPSFQSEMIDIMRLAIE----MQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQLRL
         GM  +P       +T         +SS        +   E  D +RL  +     ++THMGRLAS QKEKYELEF RRKEVVN IYNIDGL+EDDQ+ L
Subjt:  DGMDEEPVEQSIGRAT-------PAESSRCSKRKRPSFQSEMIDIMRLAIE----MQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQLRL

Query:  FDV
         D+
Subjt:  FDV

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]9.1e-5858.19Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------------
        +ED +LVEALLYLVE GWRS+NGTFR GYLQ+LE+ILHEKVP CALN+NTIECKVRSLKKQYNAVSEML                               
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEML-------------------------------

Query:  ---------------------------------ESPLNQDGMDEEPVEQSIGRATP-AESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK
                                         ESPLNQD +DEEP EQS GRA+  AESSR SKRKRPSFQ+EMIDIMR  +EMQ+THMGRLAS QKEK
Subjt:  ---------------------------------ESPLNQDGMDEEPVEQSIGRATP-AESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK

Query:  YELEFKRRKEVVNTIYNIDGLNEDDQLRLFDV
        YELEF RRKEVVN IY+IDGL+EDDQ+   D+
Subjt:  YELEFKRRKEVVNTIYNIDGLNEDDQLRLFDV

TrEMBL top hitse value%identityAlignment
A0A2P5D960 Myb/SANT-like domain containing protein2.4e-1152.11Show/hide
Query:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKKQYNAVSEML
        +ED++LVE LL +   G W++NNGTF+ GYLQ LE++L+EK+PRC L     I+ +++ LKKQ++A+SEML
Subjt:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKKQYNAVSEML

A0A2P5FL77 Myb/SANT-like domain containing protein2.4e-1152.11Show/hide
Query:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKKQYNAVSEML
        +ED++LVE LL +   G W++NNGTF+ GYLQ LE++L+EK+PRC L     I+ +++ LKKQ++A+SEML
Subjt:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKKQYNAVSEML

A0A444Y0T8 Uncharacterized protein4.1e-1130.29Show/hide
Query:  EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEMLESPLNQDGMDEEPVEQSIGRATPAESS-----
        EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L +   E  +   +   N    + E+ +  +   +EP    +  A  A ++     
Subjt:  EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEMLESPLNQDGMDEEPVEQSIGRATPAESS-----

Query:  -RCSKRKRPSFQSEMIDI-------MRLAIEMQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQLR
           +KRKR S   E+IDI       M+ A +     +  + SC K + E   +RR +++  + ++ GL+ DD+++
Subjt:  -RCSKRKRPSFQSEMIDI-------MRLAIEMQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQLR

A0A445CBK2 Uncharacterized protein6.9e-1130.94Show/hide
Query:  EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEMLESPLNQDGMDEEPVEQSI-----GRATPAESS
        EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L +   E  +   +   N    + E+ +  +   +EP    I       A P+ S+
Subjt:  EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEMLESPLNQDGMDEEPVEQSI-----GRATPAESS

Query:  RCS-------KRKRPSFQSEMIDI-------MRLAIEMQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQLR
          S       KRKR S   E+IDI       M+ A +     +  + SC K + E   +RR +++  + ++ GL+ DD+++
Subjt:  RCS-------KRKRPSFQSEMIDI-------MRLAIEMQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQLR

A0A803NQW5 Uncharacterized protein1.1e-1154.17Show/hide
Query:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCAL-NKNTIECKVRSLKKQYNAVSEMLE
        +ED++LVE LL LV  G W+++NGTF+PGYLQ LE+ ++EKVP C L  +  IE +++ LKKQ+NA+S+ML+
Subjt:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCAL-NKNTIECKVRSLKKQYNAVSEMLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCT
GCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGAATCACCATTAA
ATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATG
ATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGT
AAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGCTAAGGTTATTTGACGTTGGGAGTGTTGAGATTACTCCACCTCAACTAAGGTTGTTTTCGACGTTGA
GTAGTGTTGAGCTTCGCTCCATCTCAACTAAGGAAAGTTGGCACCGCGACGCTAACCGACATCAAAATGTAGCGCTGCATCGGTATGAGATGGCACCGCTTCGTTGTGCA
TCATCAATTCCTACCACCAGCATCGTGTCGCAATGCGGTACCAGTGCTGCTGCGCTTCTTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCT
GCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGAATCACCATTAA
ATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATG
ATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGT
AAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGCTAAGGTTATTTGACGTTGGGAGTGTTGAGATTACTCCACCTCAACTAAGGTTGTTTTCGACGTTGA
GTAGTGTTGAGCTTCGCTCCATCTCAACTAAGGAAAGTTGGCACCGCGACGCTAACCGACATCAAAATGTAGCGCTGCATCGGTATGAGATGGCACCGCTTCGTTGTGCA
TCATCAATTCCTACCACCAGCATCGTGTCGCAATGCGGTACCAGTGCTGCTGCGCTTCTTGTATAG
Protein sequenceShow/hide protein sequence
MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEMLESPLNQDGMDEEPVEQSIGRATPAESSRCSKRKRPSFQSEM
IDIMRLAIEMQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQLRLFDVGSVEITPPQLRLFSTLSSVELRSISTKESWHRDANRHQNVALHRYEMAPLRCA
SSIPTTSIVSQCGTSAAALLV