; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G012130 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G012130
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationCG_Chr05:15283722..15289812
RNA-Seq ExpressionClCG05G012130
SyntenyClCG05G012130
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR009287 - Transcription initiation Spt4
IPR022800 - Spt4/RpoE2 zinc finger
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 - Spt4 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048459.1 transcription elongation factor SPT4-like protein 2 [Cucumis melo var. makuwa]7.8e-6896.85Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  WLLLPVTSETKHQDWEIGACGIGGHLV
         LLLPVTS+TKHQ WEIGACGIGGHLV
Subjt:  WLLLPVTSETKHQDWEIGACGIGGHLV
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]1.2e-5299Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]3.5e-5298Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]3.5e-5298Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]4.1e-53100Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog5.8e-5399Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A1S3CFH1 Transcription elongation factor SPT4 homolog5.8e-5399Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A5A7U4T8 Transcription elongation factor SPT4-like protein 23.8e-6896.85Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  WLLLPVTSETKHQDWEIGACGIGGHLV
         LLLPVTS+TKHQ WEIGACGIGGHLV
Subjt:  WLLLPVTSETKHQDWEIGACGIGGHLV
A0A6J1CNB4 Transcription elongation factor SPT4 homolog1.7e-5298Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A6J1K6X8 Transcription elongation factor SPT4 homolog1.7e-5298Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A1.5e-1844.09Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
Q5RFH5 Transcription elongation factor SPT41.2e-1844.09Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
Q6DGQ0 Transcription elongation factor SPT41.8e-1948.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP
Q8LCQ3 Transcription elongation factor SPT4 homolog 12.9e-4982.35Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  WL
        ++
Subjt:  WL
Q94C60 Transcription elongation factor SPT4 homolog 22.0e-5086.27Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  WL
         L
Subjt:  WL
Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein2.1e-5082.35Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  WL
        ++
Subjt:  WL
AT5G08565.2 Transcription initiation Spt4-like protein6.2e-3968.63Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+F PGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  WL
        ++
Subjt:  WL
AT5G63670.1 SPT4 homolog 21.4e-5186.27Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  WL
         L
Subjt:  WL
AT5G63670.2 SPT4 homolog 23.3e-4089.87Show/hide
Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGTGGCTCCTCTTGCCTGTAACTTCAGAAACT
AAACATCAGGATTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAAGATTG
CCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGGTGAGTGTGAGCAGTGAAGAGGTAGAATTTCCTATGGAGGAAT
CAATGCAACAAGAGTTATTATCAGAGGATATATTTGCAGAAATCTATAATCATGTTTTTGCAAGCGAATACATTAGATCACTTAGTTCAAAGCCCTTTGTTGCAGCATCA
CCAATGTCTTTTCCTTTGATTCCTGACAAATTCACTTTTTTTGTTAAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
TTTTATTTTGAAGCCCGACTTTCTATTTCTTCTTCTTTCTCCCTTGGTTAGTACTACTATTCGTTCCCTAGTTTTCTTTTCTGCCGATGCTGTGCACACCGGCTCACTGA
CGCCGCCCGCCAGTCATTACTGCCGTCGACCCGCTGCCGTGCCGCCTCCACCGACGACCATACATCCAAAGTAATCGGCAGAAGGATCGAGTAGGTGATTGGAAACTAGC
AGGGAGGGATCGGAAGTAATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTT
TCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATC
CTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGTGGCTCCTCTTG
CCTGTAACTTCAGAAACTAAACATCAGGATTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTC
GAGTGAAGTAGAAGATTGCCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGGTGAGTGTGAGCAGTGAAGAGGTAG
AATTTCCTATGGAGGAATCAATGCAACAAGAGTTATTATCAGAGGATATATTTGCAGAAATCTATAATCATGTTTTTGCAAGCGAATACATTAGATCACTTAGTTCAAAG
CCCTTTGTTGCAGCATCACCAATGTCTTTTCCTTTGATTCCTGACAAATTCACTTTTTTTGTTAAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACG
TGTTTAACTGTATGTTATATCTAGTTTATCCTGATTACAAAGAATTCCACCTTGTTCATGTAGTAGCACTTTTAGTTGAACTAGCATTTAGTGTGTGTTGTCATTTGATT
GGAATGAACAGAAGGTATAGTCGCTAACACCTTGCATTGTACATCTTTATTTGCTTCCCCAGTGCGTTTCTTTATTGCCTGTTAAAATACTCACCCACGGTTTGAAGAGG
TTGAATTTGAGTGGCTGAGAACACAGGTTTAACCAAAGTACTGTTAGTTTATTGCTCCAAGGAGAAAGCATGTTGGCATGCGAAAAAGAGGTAGATTTAATACAGATGGA
TATCATTTGTACTTAATTGACAAGAATAAAG
Protein sequenceShow/hide protein sequence
MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWLLLPVTSET
KHQDWEIGACGIGGHLVMEDEAFILSNDGKSSEVEDCPKVLLELDRPLTLNDLDDYGPKVSVSSEEVEFPMEESMQQELLSEDIFAEIYNHVFASEYIRSLSSKPFVAAS
PMSFPLIPDKFTFFVKNLCEEERVQYAPPKRV