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ClCG05G012200 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G012200
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
Genome locationCG_Chr05:15468187..15471466
RNA-Seq ExpressionClCG05G012200
SyntenyClCG05G012200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038887514.1 RNA-binding protein 39-like isoform X1 [Benincasa hispida]3.0e-0437.93Show/hide
Query:  KKVEKEKIEKRKRAKQLRVIWAVNDGNDIISPG----SPSDRNP---HLSTTIHCSKEK----EKNFESLVAQPS--SSKKHSHLLKLFLRHFARKKTSF
        K  E++  E   RA ++R +  + D N   S G    + S  +P    +   ++  K+K        E +  + S   SKKHS LLK F  HF RKKTSF
Subjt:  KKVEKEKIEKRKRAKQLRVIWAVNDGNDIISPG----SPSDRNP---HLSTTIHCSKEK----EKNFESLVAQPS--SSKKHSHLLKLFLRHFARKKTSF

Query:  LNSWSTIVNSNLLEEC
         NSW+T+ NS+LLEEC
Subjt:  LNSWSTIVNSNLLEEC

XP_038887873.1 ABC transporter C family member 2-like isoform X1 [Benincasa hispida]1.9e-0647.44Show/hide
Query:  RLDYDGESIDSANNDELDSSDAEVIPKEDGETVDEFGKDICQLFQAEEDPLFNKAGDTSSPPLSKKEIPQNLLSIVED
        + D DG+SI SA+ +EL+ S+AE   +E  ET   +G D+  LFQ+ E  L    G +S  P+ KKEIPQNL+S+VED
Subjt:  RLDYDGESIDSANNDELDSSDAEVIPKEDGETVDEFGKDICQLFQAEEDPLFNKAGDTSSPPLSKKEIPQNLLSIVED

XP_038887874.1 ABC transporter C family member 2-like isoform X2 [Benincasa hispida]1.9e-0647.44Show/hide
Query:  RLDYDGESIDSANNDELDSSDAEVIPKEDGETVDEFGKDICQLFQAEEDPLFNKAGDTSSPPLSKKEIPQNLLSIVED
        + D DG+SI SA+ +EL+ S+AE   +E  ET   +G D+  LFQ+ E  L    G +S  P+ KKEIPQNL+S+VED
Subjt:  RLDYDGESIDSANNDELDSSDAEVIPKEDGETVDEFGKDICQLFQAEEDPLFNKAGDTSSPPLSKKEIPQNLLSIVED

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCTGCAAGTTGCAACTAAGGGGAAAAAAGTGGAGAAAGAGAAAATCGAGAAGAGGAAGAGGGCAAAACAATTGAGGGTAATTTGGGCAGTTAATGATGGTAATGA
TATTATCTCTCCAGGAAGTCCAAGTGACAGAAATCCTCATTTGTCTACTACAATCCATTGTTCAAAGGAGAAGGAAAAGAATTTCGAATCACTTGTTGCTCAACCATCTT
CCTCTAAAAAGCACTCTCATTTACTAAAGTTGTTCCTCAGACATTTTGCTCGAAAGAAGACTTCATTCCTTAACTCATGGTCTACTATAGTGAACTCGAATCTATTGGAG
GAATGTATCTCTGGTATTATTCCCGAAAGGTTGGATTATGATGGTGAATCAATAGATAGCGCCAACAATGATGAGCTTGATAGTTCTGATGCAGAGGTGATTCCAAAGGA
AGATGGAGAGACAGTAGATGAGTTTGGCAAAGACATCTGTCAGCTATTTCAAGCAGAGGAAGATCCGTTGTTCAACAAGGCTGGGGATACTTCAAGTCCTCCTCTCAGCA
AGAAAGAGATCCCACAGAACTTATTATCTATAGTTGAAGACTTGGCCTATTGTTTTAGAAGTTCAAAACTCTATGCTTGTGGCAAGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCCTGCAAGTTGCAACTAAGGGGAAAAAAGTGGAGAAAGAGAAAATCGAGAAGAGGAAGAGGGCAAAACAATTGAGGGTAATTTGGGCAGTTAATGATGGTAATGA
TATTATCTCTCCAGGAAGTCCAAGTGACAGAAATCCTCATTTGTCTACTACAATCCATTGTTCAAAGGAGAAGGAAAAGAATTTCGAATCACTTGTTGCTCAACCATCTT
CCTCTAAAAAGCACTCTCATTTACTAAAGTTGTTCCTCAGACATTTTGCTCGAAAGAAGACTTCATTCCTTAACTCATGGTCTACTATAGTGAACTCGAATCTATTGGAG
GAATGTATCTCTGGTATTATTCCCGAAAGGTTGGATTATGATGGTGAATCAATAGATAGCGCCAACAATGATGAGCTTGATAGTTCTGATGCAGAGGTGATTCCAAAGGA
AGATGGAGAGACAGTAGATGAGTTTGGCAAAGACATCTGTCAGCTATTTCAAGCAGAGGAAGATCCGTTGTTCAACAAGGCTGGGGATACTTCAAGTCCTCCTCTCAGCA
AGAAAGAGATCCCACAGAACTTATTATCTATAGTTGAAGACTTGGCCTATTGTTTTAGAAGTTCAAAACTCTATGCTTGTGGCAAGATTTAA
Protein sequenceShow/hide protein sequence
MTLQVATKGKKVEKEKIEKRKRAKQLRVIWAVNDGNDIISPGSPSDRNPHLSTTIHCSKEKEKNFESLVAQPSSSKKHSHLLKLFLRHFARKKTSFLNSWSTIVNSNLLE
ECISGIIPERLDYDGESIDSANNDELDSSDAEVIPKEDGETVDEFGKDICQLFQAEEDPLFNKAGDTSSPPLSKKEIPQNLLSIVEDLAYCFRSSKLYACGKI