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ClCG05G012400 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G012400
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationCG_Chr05:15813852..15814556
RNA-Seq ExpressionClCG05G012400
SyntenyClCG05G012400
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066132.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa]6.7e-0564.86Show/hide
Query:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG
        +LNQ T+IK+D +N+LLW+ +ALPIL+ YKLEGHL G
Subjt:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]1.5e-0445.16Show/hide
Query:  TLTFVN-----LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIGLDEYTSIVVVLQNQ
        T +F N     +LNQ T+IK+D  N+LLW+ +ALPIL+SYKL  HL G       +++L  Q
Subjt:  TLTFVN-----LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIGLDEYTSIVVVLQNQ

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]1.3e-0578.38Show/hide
Query:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG
        LLNQ TSIKMD  NFLLWQN+ALPILRSYKL  +L G
Subjt:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]1.1e-0452.73Show/hide
Query:  SGTYLVG--TLTFVN-----LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHL
        +G  L+G  T  F N     +LNQ  S+K+D  N+LLWQ +ALPIL+SYKL+GHL
Subjt:  SGTYLVG--TLTFVN-----LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHL

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]6.7e-0571.43Show/hide
Query:  ATSIKMDCNNFLLWQNIALPILRSYKLEGHLIGLD
        AT+IK+D  N+LLW+N+ALPILRSY+LEGHL G D
Subjt:  ATSIKMDCNNFLLWQNIALPILRSYKLEGHLIGLD

TrEMBL top hitse value%identityAlignment
A0A5A7V1E0 Reverse transcriptase, RNA-dependent DNA polymerase7.2e-0562.16Show/hide
Query:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG
        LLNQ +S+K+D  N+LLW+ +ALPI++SYK EGHL G
Subjt:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG

A0A5A7VCS1 Putative leucine-rich repeat receptor-like protein kinase3.2e-0564.86Show/hide
Query:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG
        +LNQ T+IK+D +N+LLW+ +ALPIL+ YKLEGHL G
Subjt:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG

A0A5A7VPY0 Uncharacterized protein7.2e-0545.16Show/hide
Query:  TLTFVN-----LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIGLDEYTSIVVVLQNQ
        T +F N     +LNQ T+IK+D  N+LLW+ +ALPIL+SYKL  HL G       +++L  Q
Subjt:  TLTFVN-----LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIGLDEYTSIVVVLQNQ

A0A5D3BVJ1 Uncharacterized protein7.2e-0562.16Show/hide
Query:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG
        LLNQ +S+K+D  N+LLW+ +ALPI++SYK EGHL G
Subjt:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG

A0A6J1DCW4 uncharacterized protein LOC1110195986.5e-0678.38Show/hide
Query:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG
        LLNQ TSIKMD  NFLLWQN+ALPILRSYKL  +L G
Subjt:  LLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACAGCAACCGAGTTCGCTTATGCGAAGAAGAATCTTGATGCGTATGAAGTTAGATCCGGAACCTACCTAGTCGGTACTCTTACGTTTGTAAATCTATTGAATCA
AGCGACTTCGATCAAGATGGATTGCAACAACTTCTTGTTGTGGCAGAACATTGCTCTCCCAATCCTTCGTAGCTACAAACTCGAAGGACATCTCATTGGACTTGATGAGT
ACACTTCCATTGTAGTTGTCTTACAGAACCAAGACTTGAGCTGGACTGCTATGCAAAATCGTTTGCTTACCTATGAAAATCGTCAAGAACAATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACAGCAACCGAGTTCGCTTATGCGAAGAAGAATCTTGATGCGTATGAAGTTAGATCCGGAACCTACCTAGTCGGTACTCTTACGTTTGTAAATCTATTGAATCA
AGCGACTTCGATCAAGATGGATTGCAACAACTTCTTGTTGTGGCAGAACATTGCTCTCCCAATCCTTCGTAGCTACAAACTCGAAGGACATCTCATTGGACTTGATGAGT
ACACTTCCATTGTAGTTGTCTTACAGAACCAAGACTTGAGCTGGACTGCTATGCAAAATCGTTTGCTTACCTATGAAAATCGTCAAGAACAATGGTAG
Protein sequenceShow/hide protein sequence
MKTATEFAYAKKNLDAYEVRSGTYLVGTLTFVNLLNQATSIKMDCNNFLLWQNIALPILRSYKLEGHLIGLDEYTSIVVVLQNQDLSWTAMQNRLLTYENRQEQW