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ClCG05G012940 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G012940
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPMD domain-containing protein
Genome locationCG_Chr05:17771212..17771956
RNA-Seq ExpressionClCG05G012940
SyntenyClCG05G012940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033523.1 hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa]1.5e-1340Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+S  +L +RE  + ++I++Q   +N I L KW KE+ VN NS LT            PN+N ESTLG  +I + K+
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARNM I KR
Subjt:  HWGII-------------------TVARNMAIFKR

KAA0033822.1 uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa]3.9e-1441.48Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+SG +L +RE  + ++I++Q   +N I L KW KE+ VN NS LT            PNENPESTL   +I + K 
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARN AI KR
Subjt:  HWGII-------------------TVARNMAIFKR

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]7.8e-1541.48Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+SG +L +R+  + ++I++Q   +N I L KW KE+ VN NS LT            PNENPESTLG  +I + K+
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARN AI KR
Subjt:  HWGII-------------------TVARNMAIFKR

TYK21863.1 uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa]3.9e-1441.48Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+SG +L +RE  + ++I++Q   +N I L KW KE+ VN NS LT            PNENPESTL   +I + K 
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARN AI KR
Subjt:  HWGII-------------------TVARNMAIFKR

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]1.1e-1642.96Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-------------LTPNENPESTLGYPIIDNHKV
        ++FTE+ + TKRCLIIL D+ Q LE G IL +RE  Y +++++Q P DN IFL KW KER VN NS               PNE+PESTLG  II++ K+
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-------------LTPNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARN A+ KR
Subjt:  HWGII-------------------TVARNMAIFKR

TrEMBL top hitse value%identityAlignment
A0A5A7SRI5 Uncharacterized protein1.9e-1441.48Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+SG +L +RE  + ++I++Q   +N I L KW KE+ VN NS LT            PNENPESTL   +I + K 
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARN AI KR
Subjt:  HWGII-------------------TVARNMAIFKR

A0A5A7SST7 PMD domain-containing protein7.1e-1440Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+S  +L +RE  + ++I++Q   +N I L KW KE+ VN NS LT            PN+N ESTLG  +I + K+
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARNM I KR
Subjt:  HWGII-------------------TVARNMAIFKR

A0A5A7U4C3 Uncharacterized protein3.8e-1541.48Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+SG +L +R+  + ++I++Q   +N I L KW KE+ VN NS LT            PNENPESTLG  +I + K+
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARN AI KR
Subjt:  HWGII-------------------TVARNMAIFKR

A0A5D3BB02 PMD domain-containing protein7.1e-1440Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+S  +L +RE  + ++I++Q   +N I L KW KE+ VN NS LT            PN+N ESTLG  +I + K+
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARNM I KR
Subjt:  HWGII-------------------TVARNMAIFKR

A0A5D3DEA3 Uncharacterized protein1.9e-1441.48Show/hide
Query:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV
        +YFTE+ + TKRCLIIL D  Q L+SG +L +RE  + ++I++Q   +N I L KW KE+ VN NS LT            PNENPESTL   +I + K 
Subjt:  MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNS-LT------------PNENPESTLGYPIIDNHKV

Query:  HWGII-------------------TVARNMAIFKR
         WG +                    VARN AI KR
Subjt:  HWGII-------------------TVARNMAIFKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTTCACAGAACATCCCAATTTGACGAAAAGGTGCTTAATCATCCTGAACGATTTATACCAACCCCTAGAGAGTGGAACCATTCTTTCTATGAGAGAGATGATATA
TAGGGATCTTATAGAAACCCAACCTCCCATAGACAATTCTATCTTCTTATCTAAATGGTTTAAAGAGCGACCTGTGAATTTTAATTCGTTAACTCCAAATGAAAATCCTG
AGTCAACGTTAGGTTATCCAATTATAGACAACCACAAAGTTCATTGGGGTATTATCACCGTTGCTCGAAATATGGCGATATTTAAGAGGAAGCAACGAAGTCATTCGACT
TGGATATGGAAAAGTTGCAGTGAAACCATCAACTTTGGAGATGGACAGGTTGAAGCAAAACCATCGTACTTGGAGATGAAAAAGCTACGATGGAAAAGCTGTGGGATAAT
CATCAAAATTAAAGATGGAAAAGTTGCAATAAAATCAGTGGATTTGAGGATGGAGAACTGCGACGTAACCATTGAACTTGGAGATGGAAAAGTTGCGGCAAAACCATCGT
GCTTAGAGATGAAGAAGTTGCGGCAAAGCCATCGTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTTCACAGAACATCCCAATTTGACGAAAAGGTGCTTAATCATCCTGAACGATTTATACCAACCCCTAGAGAGTGGAACCATTCTTTCTATGAGAGAGATGATATA
TAGGGATCTTATAGAAACCCAACCTCCCATAGACAATTCTATCTTCTTATCTAAATGGTTTAAAGAGCGACCTGTGAATTTTAATTCGTTAACTCCAAATGAAAATCCTG
AGTCAACGTTAGGTTATCCAATTATAGACAACCACAAAGTTCATTGGGGTATTATCACCGTTGCTCGAAATATGGCGATATTTAAGAGGAAGCAACGAAGTCATTCGACT
TGGATATGGAAAAGTTGCAGTGAAACCATCAACTTTGGAGATGGACAGGTTGAAGCAAAACCATCGTACTTGGAGATGAAAAAGCTACGATGGAAAAGCTGTGGGATAAT
CATCAAAATTAAAGATGGAAAAGTTGCAATAAAATCAGTGGATTTGAGGATGGAGAACTGCGACGTAACCATTGAACTTGGAGATGGAAAAGTTGCGGCAAAACCATCGT
GCTTAGAGATGAAGAAGTTGCGGCAAAGCCATCGTACTTGA
Protein sequenceShow/hide protein sequence
MYFTEHPNLTKRCLIILNDLYQPLESGTILSMREMIYRDLIETQPPIDNSIFLSKWFKERPVNFNSLTPNENPESTLGYPIIDNHKVHWGIITVARNMAIFKRKQRSHST
WIWKSCSETINFGDGQVEAKPSYLEMKKLRWKSCGIIIKIKDGKVAIKSVDLRMENCDVTIELGDGKVAAKPSCLEMKKLRQSHRT