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ClCG05G012950 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G012950
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionNon-LTR retroelement reverse transcriptase-like protein
Genome locationCG_Chr05:17783651..17783945
RNA-Seq ExpressionClCG05G012950
SyntenyClCG05G012950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065356.1 hypothetical protein E6C27_scaffold17G00040 [Cucumis melo var. makuwa]9.1e-0453.49Show/hide
Query:  PFGFTVWSGVLSLMGSSHRLARWAVELEWVYRMGRGSRARRKL
        PFG  VWS VL +M SS+R+  W VEL W++  G G   RRKL
Subjt:  PFGFTVWSGVLSLMGSSHRLARWAVELEWVYRMGRGSRARRKL
TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein7.5e-0455.81Show/hide
Query:  PFGFTVWSGVLSLMGSSHRLARWAVELEWVYRMGRGSRARRKL
        PFG  VWS VL +M SSHR+  W VEL W+   G G   RRKL
Subjt:  PFGFTVWSGVLSLMGSSHRLARWAVELEWVYRMGRGSRARRKL
A0A5A7VG93 Uncharacterized protein4.4e-0453.49Show/hide
Query:  PFGFTVWSGVLSLMGSSHRLARWAVELEWVYRMGRGSRARRKL
        PFG  VWS VL +M SS+R+  W VEL W++  G G   RRKL
Subjt:  PFGFTVWSGVLSLMGSSHRLARWAVELEWVYRMGRGSRARRKL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTCGGTCAACATACCGATGAATTGTTGTTTACTTCGCCTAAGATGGTGGGAGATGTTGTGGTAGTTGAACCATCCAAGGAGGTGCTGGAGTACCCTTTTGGGTT
TACGGTGTGGTCGGGTGTGCTGAGTCTAATGGGTTCGTCCCATCGGTTGGCGAGGTGGGCTGTGGAGCTGGAGTGGGTTTATAGGATGGGGCGTGGTAGTAGGGCTAGGA
GGAAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTCGGTCAACATACCGATGAATTGTTGTTTACTTCGCCTAAGATGGTGGGAGATGTTGTGGTAGTTGAACCATCCAAGGAGGTGCTGGAGTACCCTTTTGGGTT
TACGGTGTGGTCGGGTGTGCTGAGTCTAATGGGTTCGTCCCATCGGTTGGCGAGGTGGGCTGTGGAGCTGGAGTGGGTTTATAGGATGGGGCGTGGTAGTAGGGCTAGGA
GGAAATTATGA
Protein sequenceShow/hide protein sequence
MRVGQHTDELLFTSPKMVGDVVVVEPSKEVLEYPFGFTVWSGVLSLMGSSHRLARWAVELEWVYRMGRGSRARRKL