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ClCG05G012960 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G012960
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationCG_Chr05:17784141..17784699
RNA-Seq ExpressionClCG05G012960
SyntenyClCG05G012960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-0841.6Show/hide
Query:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA                             A+WN+FSKLVE  +RVEKS+ +   E R       + S S +  R   E S RF
Subjt:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGGILDSKYHWG
         P VSS+GSFKS++ G   SK   G
Subjt:  APGVSSKGSFKSKHGGILDSKYHWG

KAA0039476.1 uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]5.8e-0842.24Show/hide
Query:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA  +I+                        A+WN+FSKLVEA +RV KS+ +   E R       + S S +  R+  E S RF
Subjt:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGG
         PGV S+G+FKS++ G
Subjt:  APGVSSKGSFKSKHGG

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]2.6e-0842.15Show/hide
Query:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M++AEYEKKYTELS YA  +I+                        A+WN+FSKLVEA +RVEKS+  E  + R       + S S +  R   E S RF
Subjt:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGGILDSK
         PGVSS+G+FKS++ G   SK
Subjt:  APGVSSKGSFKSKHGGILDSK

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]4.4e-0841.6Show/hide
Query:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA                             A+WN+FSKLVE  +RVEKS+ +   E R       + S S +  R   E S RF
Subjt:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGGILDSKYHWG
         P VSS+GSFKS++ G   SK   G
Subjt:  APGVSSKGSFKSKHGGILDSKYHWG

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]5.8e-0842.24Show/hide
Query:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA  +I+                        A+WN+FSKLVEA +RV KS+ +   E R       + S S +  R+  E S RF
Subjt:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGG
         PGV S+G+FKS++ G
Subjt:  APGVSSKGSFKSKHGG

TrEMBL top hitse value%identityAlignment
A0A5A7T1M0 Reverse transcriptase2.1e-0841.6Show/hide
Query:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA                             A+WN+FSKLVE  +RVEKS+ +   E R       + S S +  R   E S RF
Subjt:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGGILDSKYHWG
         P VSS+GSFKS++ G   SK   G
Subjt:  APGVSSKGSFKSKHGGILDSKYHWG

A0A5A7TBS0 CCHC-type domain-containing protein2.8e-0842.24Show/hide
Query:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA  +I+                        A+WN+FSKLVEA +RV KS+ +   E R       + S S +  R+  E S RF
Subjt:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGG
         PGV S+G+FKS++ G
Subjt:  APGVSSKGSFKSKHGG

A0A5A7UZM6 Gag protease polyprotein-like protein1.3e-0842.15Show/hide
Query:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M++AEYEKKYTELS YA  +I+                        A+WN+FSKLVEA +RVEKS+  E  + R       + S S +  R   E S RF
Subjt:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGGILDSK
         PGVSS+G+FKS++ G   SK
Subjt:  APGVSSKGSFKSKHGGILDSK

A0A5D3BB91 Reverse transcriptase2.1e-0841.6Show/hide
Query:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA                             A+WN+FSKLVE  +RVEKS+ +   E R       + S S +  R   E S RF
Subjt:  MSVAEYEKKYTELSKYA--------------------------IIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGGILDSKYHWG
         P VSS+GSFKS++ G   SK   G
Subjt:  APGVSSKGSFKSKHGGILDSKYHWG

A0A5D3CTK6 CCHC-type domain-containing protein2.8e-0842.24Show/hide
Query:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF
        M+VAEYEKKYTELSKYA  +I+                        A+WN+FSKLVEA +RV KS+ +   E R       + S S +  R+  E S RF
Subjt:  MSVAEYEKKYTELSKYA--IIK------------------------AEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRF

Query:  APGVSSKGSFKSKHGG
         PGV S+G+FKS++ G
Subjt:  APGVSSKGSFKSKHGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTAGCAGAGTACGAGAAGAAGTACACGGAGTTATCCAAGTACGCTATCATCAAAGCTGAGTGGAATGAGTTTTCTAAACTAGTGGAAGCTCCAATGAGGGTAGA
AAAGAGTATGGCAAAAGAAAACTGGGAAGGAAGAGTAGTATACGGTGGTAGTGGATCTAAGTCTCCAAGTCCATATGTTGAACGAATAAGAAGTGAAGGAAGTAAAAGAT
TTGCACCTGGAGTATCTAGTAAAGGATCATTTAAATCCAAGCATGGTGGTATATTGGATTCAAAGTATCATTGGGGACAGTGTCCTAGCGAAACTCGTATTGTTATAAAT
GTGGACAACCAGGTCACTTTAAAAGAGAATGTCCACACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTAGCAGAGTACGAGAAGAAGTACACGGAGTTATCCAAGTACGCTATCATCAAAGCTGAGTGGAATGAGTTTTCTAAACTAGTGGAAGCTCCAATGAGGGTAGA
AAAGAGTATGGCAAAAGAAAACTGGGAAGGAAGAGTAGTATACGGTGGTAGTGGATCTAAGTCTCCAAGTCCATATGTTGAACGAATAAGAAGTGAAGGAAGTAAAAGAT
TTGCACCTGGAGTATCTAGTAAAGGATCATTTAAATCCAAGCATGGTGGTATATTGGATTCAAAGTATCATTGGGGACAGTGTCCTAGCGAAACTCGTATTGTTATAAAT
GTGGACAACCAGGTCACTTTAAAAGAGAATGTCCACACTTGA
Protein sequenceShow/hide protein sequence
MSVAEYEKKYTELSKYAIIKAEWNEFSKLVEAPMRVEKSMAKENWEGRVVYGGSGSKSPSPYVERIRSEGSKRFAPGVSSKGSFKSKHGGILDSKYHWGQCPSETRIVIN
VDNQVTLKENVHT