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ClCG05G013230 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G013230
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationCG_Chr05:18663306..18663897
RNA-Seq ExpressionClCG05G013230
SyntenyClCG05G013230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]1.7e-0935.04Show/hide
Query:  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQ
        SYK   HL G+  C          P  SI+    E   +       ++ + P+Y  WI  D LL+GWLYN MT EVT Q+ G      LWEA Q+ + +Q
Subjt:  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQ

Query:  ASFQQDYLKRMLQQTKR
        +  ++D+L +  Q TK+
Subjt:  ASFQQDYLKRMLQQTKR

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]3.9e-1139.05Show/hide
Query:  SYKFEVHLTGKDVCPEMSIILPPSEDEPQGLL------LLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKR
        SYK   +LTG   CP   ++   +    +G         L P Y  WI  D+LL+GWLYN M  +V  QV G  T+  LW A+QE + +Q+  + DYLK+
Subjt:  SYKFEVHLTGKDVCPEMSIILPPSEDEPQGLL------LLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKR

Query:  MLQQT
        + QQT
Subjt:  MLQQT

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]1.1e-1035.92Show/hide
Query:  SYKFEVHLTGKDVCPEMSIILPP--SEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQ
        SYK + HLT ++ CP   II P   +         + P+++ W+  D LL+GW+YN MT EV  Q+ G +T   LWEA+Q+ + +Q   ++D+L+   Q 
Subjt:  SYKFEVHLTGKDVCPEMSIILPP--SEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQ

Query:  TKR
        T++
Subjt:  TKR

XP_038887015.1 uncharacterized protein LOC120077182 [Benincasa hispida]1.8e-1135.71Show/hide
Query:  YKFEVHLTGKDVCPEMSII--LPPSE------------DEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASF
        YK E HL+G  +C  M  +  +P  E                G     P Y +W+ ADQLL+GW YN MT EV  Q+ GH++   LW+A+   + +Q+  
Subjt:  YKFEVHLTGKDVCPEMSII--LPPSE------------DEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASF

Query:  QQDYLKRMLQQT
        ++DYL+++ QQT
Subjt:  QQDYLKRMLQQT

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]8.8e-1135.38Show/hide
Query:  SYKFEVHLTGKDVCP--------EMSIILPPSED-----EPQGLLLLYPEYNIWIAA------------------DQLLIGWLYNLMTIEVTYQVNGHDT
        SY+ E HLTG+D CP        + +  +PP ++     +  G+  L P+  I  A+                  DQLL+GWLYN MT EV  QV G++ 
Subjt:  SYKFEVHLTGKDVCP--------EMSIILPPSED-----EPQGLLLLYPEYNIWIAA------------------DQLLIGWLYNLMTIEVTYQVNGHDT

Query:  TNGLWEALQEFYRLQASFQQDYLKRMLQQT
           LW A+QE + LQ+   +DYL+++ QQT
Subjt:  TNGLWEALQEFYRLQASFQQDYLKRMLQQT

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911168.0e-1035.04Show/hide
Query:  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQ
        SYK   HL G+  C          P  SI+    E   +       ++ + P+Y  WI  D LL+GWLYN MT EVT Q+ G      LWEA Q+ + +Q
Subjt:  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQ

Query:  ASFQQDYLKRMLQQTKR
        +  ++D+L +  Q TK+
Subjt:  ASFQQDYLKRMLQQTKR

A0A5A7VPY0 Uncharacterized protein8.0e-1035.04Show/hide
Query:  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQ
        SYK   HL G+  C          P  SI+    E   +       ++ + P+Y  WI  D LL+GWLYN MT EVT Q+ G      LWEA Q+ + +Q
Subjt:  SYKFEVHLTGKDVC----------PEMSIILPPSEDEPQ------GLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQ

Query:  ASFQQDYLKRMLQQTKR
        +  ++D+L +  Q TK+
Subjt:  ASFQQDYLKRMLQQTKR

A0A6J1D5J0 uncharacterized protein LOC1110175011.0e-0941.46Show/hide
Query:  ILPPSEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR
        I  PS         + P Y  W+  DQLL+GWLYN MT EV  QV G++    LW A+QE + +Q+  ++DYL+++ QQT++
Subjt:  ILPPSEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR

A0A6J1DCW4 uncharacterized protein LOC1110195981.9e-1139.05Show/hide
Query:  SYKFEVHLTGKDVCPEMSIILPPSEDEPQGLL------LLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKR
        SYK   +LTG   CP   ++   +    +G         L P Y  WI  D+LL+GWLYN M  +V  QV G  T+  LW A+QE + +Q+  + DYLK+
Subjt:  SYKFEVHLTGKDVCPEMSIILPPSEDEPQGLL------LLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKR

Query:  MLQQT
        + QQT
Subjt:  MLQQT

A0A803QCY3 Uncharacterized protein1.0e-0934Show/hide
Query:  YKFEVHLTGKDVCPEMSIILPPSEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR
        ++ +  L G +VCP   +    +ED  + +  L PE+  WI  DQLL+GWLY+ MT  +  +V G  +  GLW AL++ Y   +  + D  + ++Q TK+
Subjt:  YKFEVHLTGKDVCPEMSIILPPSEDEPQGLLLLYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAACATCAACAACGATCCTCAACCCCTTCCCGAAACTTCCATTCCTAATCCTTCTCCCATGAAATCAACCACCGAGTCTACCTATGTGAAGAAGAACCCTGATGC
ATATGAGGTTAGATCTGGAACTTGTCCAGTCGGCACTCCTGCTTCCATAAACTTTGACTTCCATCAAAATGGATCTCAACAACTTCTTGCTGTGGCAAAATATTGCTCTC
CCAATCCTTGGAGCTACAAATTTGAAGTACACCTCACTGGTAAGGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTCAGAAGATGAACCACAAGGTTTATTACTT
CTGTATCCTGAATATAATATTTGGATAGCTGCTGATCAGCTTCTCATTGGGTGGTTATATAACTTGATGACAATAGAAGTAACTTATCAAGTCAATGGGCATGATACAAC
AAATGGACTATGGGAGGCACTGCAAGAGTTTTATAGGCTTCAAGCCTCATTTCAACAAGATTACCTCAAAAGGATGCTTCAACAGACCAAAAGGAAGTTCCAAGATGGCC
AAATATCCAACTTTAATGAAAAGCTTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCAACATCAACAACGATCCTCAACCCCTTCCCGAAACTTCCATTCCTAATCCTTCTCCCATGAAATCAACCACCGAGTCTACCTATGTGAAGAAGAACCCTGATGC
ATATGAGGTTAGATCTGGAACTTGTCCAGTCGGCACTCCTGCTTCCATAAACTTTGACTTCCATCAAAATGGATCTCAACAACTTCTTGCTGTGGCAAAATATTGCTCTC
CCAATCCTTGGAGCTACAAATTTGAAGTACACCTCACTGGTAAGGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTCAGAAGATGAACCACAAGGTTTATTACTT
CTGTATCCTGAATATAATATTTGGATAGCTGCTGATCAGCTTCTCATTGGGTGGTTATATAACTTGATGACAATAGAAGTAACTTATCAAGTCAATGGGCATGATACAAC
AAATGGACTATGGGAGGCACTGCAAGAGTTTTATAGGCTTCAAGCCTCATTTCAACAAGATTACCTCAAAAGGATGCTTCAACAGACCAAAAGGAAGTTCCAAGATGGCC
AAATATCCAACTTTAATGAAAAGCTTTGCTGA
Protein sequenceShow/hide protein sequence
MTNINNDPQPLPETSIPNPSPMKSTTESTYVKKNPDAYEVRSGTCPVGTPASINFDFHQNGSQQLLAVAKYCSPNPWSYKFEVHLTGKDVCPEMSIILPPSEDEPQGLLL
LYPEYNIWIAADQLLIGWLYNLMTIEVTYQVNGHDTTNGLWEALQEFYRLQASFQQDYLKRMLQQTKRKFQDGQISNFNEKLC