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ClCG05G013240 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G013240
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNase H domain-containing protein
Genome locationCG_Chr05:18664370..18668169
RNA-Seq ExpressionClCG05G013240
SyntenyClCG05G013240
Gene Ontology termsNA
InterPro domainsIPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039613.1 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Cucumis melo var. makuwa]2.7e-0835.54Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTAEVGEVLAMLEGLRMTEEFSCSNVWVVKKFYSMAFVSSPFGVLYVEVYNLMSRIRIVGLGFV
        W PP  G LKLNVD      +   G+G +IR     L A               +   C     V+ FY M     PFGV Y E   L +   IVGL FV
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTAEVGEVLAMLEGLRMTEEFSCSNVWVVKKFYSMAFVSSPFGVLYVEVYNLMSRIRIVGLGFV

Query:  PQGCNRVIHNLPNFVVSSSSC
         + CNRV H+L    +SS  C
Subjt:  PQGCNRVIHNLPNFVVSSSSC

XP_019167154.1 PREDICTED: uncharacterized protein LOC109162903 [Ipomoea nil]5.0e-1033.78Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHD------------RGYLTAEVGEVLAMLEGLRMTEEFSCSNVWV------VKKFYSMAFVSSPFGVLY
        WK P +G++K+NVDA  ++   C G+G ++R D            RG LT+   E LA+ + L      + SN+ V      V + Y+     S F +L 
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHD------------RGYLTAEVGEVLAMLEGLRMTEEFSCSNVWV------VKKFYSMAFVSSPFGVLY

Query:  VEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSSCS-WSANPPL
         ++ NLMS      L FV +  N+  H L    VS S CS W  NPPL
Subjt:  VEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSSCS-WSANPPL

XP_021824838.1 uncharacterized protein LOC110765903 [Prunus avium]1.6e-0826.42Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLT------------AEVGEVLAMLEGLRMTEEFSCSNVWV-------VKKFYSMAFVSSPFGVL
        W+PP  G+ K+NVD    +     G+G ++R++RG               A   +++A +EG+R + +   + V +       +K   S    S   G+L
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLT------------AEVGEVLAMLEGLRMTEEFSCSNVWV-------VKKFYSMAFVSSPFGVL

Query:  YVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSS-CSWSANPPLWLSNLIEAEM
        + E  NL+S+ R V   + P+  N+  H L +F +S +   SW  + P+WL  +++A++
Subjt:  YVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSS-CSWSANPPLWLSNLIEAEM

XP_031116510.1 uncharacterized protein LOC116020169 [Ipomoea triloba]1.4e-0929.75Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDR------------GYLTAEVGEVLAMLEGLRMTEEFSCSNVWVVKK----FYSMAF--VSSPFGVLY
        W PP++G LKLN D    +   C G+G +IR  +            G+ + +  E +++ E L   +E    +V +       FY+++    ++ FG L 
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDR------------GYLTAEVGEVLAMLEGLRMTEEFSCSNVWVVKK----FYSMAF--VSSPFGVLY

Query:  VEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSSC-SWSANPPLWLSNLIEAEM
         +V    S+I  V   FV +  NR  H L    VS SSC  W  +PPL+L N+I +++
Subjt:  VEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSSC-SWSANPPLWLSNLIEAEM

XP_031120971.1 uncharacterized protein LOC116024211 [Ipomoea triloba]2.1e-0828.48Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTA------------EVGEVLAMLEGLRMTEEFSCSNVWVVKK----FYSMAF--VSSPFGVLY
        W PP++G LKLN+D    +   C G+G +IR  +G+  A            +  EV+++ E L   +E    +V +       FY+++    ++ FG + 
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTA------------EVGEVLAMLEGLRMTEEFSCSNVWVVKK----FYSMAF--VSSPFGVLY

Query:  VEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSSC-SWSANPPLWLSNLIEAEM
         +V    S+I  V   FV +  N   H L     S S C  W  +PPL+L N+I +++
Subjt:  VEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSSC-SWSANPPLWLSNLIEAEM

TrEMBL top hitse value%identityAlignment
A0A2P5CQV8 RNase H domain-containing protein1.9e-0727.81Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYL------------TAEVGEVLAMLEGLRMTEEFSCSNVWVVKKFYSM-------AFVSSPFGVL
        W+PP++ W+KLNVDA       C  + G+IR+  G +            T EV E   +  G+   ++     V +    Y++          S+  GV+
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYL------------TAEVGEVLAMLEGLRMTEEFSCSNVWVVKKFYSM-------AFVSSPFGVL

Query:  YVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNF-VVSSSSCSWSANPPLWL
          +V NL+  I    + FVP+ CN   H L  + V ++ + SW    P WL
Subjt:  YVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNF-VVSSSSCSWSANPPLWL

A0A5A7T9F2 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-51.3e-0835.54Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTAEVGEVLAMLEGLRMTEEFSCSNVWVVKKFYSMAFVSSPFGVLYVEVYNLMSRIRIVGLGFV
        W PP  G LKLNVD      +   G+G +IR     L A               +   C     V+ FY M     PFGV Y E   L +   IVGL FV
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTAEVGEVLAMLEGLRMTEEFSCSNVWVVKKFYSMAFVSSPFGVLYVEVYNLMSRIRIVGLGFV

Query:  PQGCNRVIHNLPNFVVSSSSC
         + CNRV H+L    +SS  C
Subjt:  PQGCNRVIHNLPNFVVSSSSC

A0A5P1EL44 Uncharacterized protein5.6e-0730.21Show/hide
Query:  NGRGYVGVASGIRHGSWSSPSVDLGSSSL-PCWKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDR------------GYLTAEVGEVLAMLEGLRMTEE
        N +G VG   G R G       DL  +SL   W+ PT G++KLNVD    + R  YG G ++R +R            G L+    E LA++ GL    +
Subjt:  NGRGYVGVASGIRHGSWSSPSVDLGSSSL-PCWKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDR------------GYLTAEVGEVLAMLEGLRMTEE

Query:  FSCSNVWVVKKFYSMAFVS---------SPFGVLYVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVS-SSSCSWSANPPLWLSNLIEAE
              +VV +  S+A ++         S  G L  E   LMS        FVP+ CN+  H +    +S      W    P WLS +I+ E
Subjt:  FSCSNVWVVKKFYSMAFVS---------SPFGVLYVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVS-SSSCSWSANPPLWLSNLIEAE

A0A5P1F2T9 Uncharacterized protein7.3e-0730.21Show/hide
Query:  NGRGYVGVASGIRHGSWSSPSVDLGSSSL-PCWKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDR------------GYLTAEVGEVLAMLEGLRMTEE
        N +G VG   G R G       DL  +SL   W+ PT G++KLNVD    + R  YG G ++R +R            G L+    E LA++ GL    +
Subjt:  NGRGYVGVASGIRHGSWSSPSVDLGSSSL-PCWKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDR------------GYLTAEVGEVLAMLEGLRMTEE

Query:  FSCSNVWVVKKFYSMAFVS---------SPFGVLYVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVS-SSSCSWSANPPLWLSNLIEAE
              +VV +  S+A ++         S  G L  E   LMS        FVP+ CN+  H +    +S      W    P WLS +I+ E
Subjt:  FSCSNVWVVKKFYSMAFVS---------SPFGVLYVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVS-SSSCSWSANPPLWLSNLIEAE

A0A6P5TBX9 uncharacterized protein LOC1107659037.7e-0926.42Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLT------------AEVGEVLAMLEGLRMTEEFSCSNVWV-------VKKFYSMAFVSSPFGVL
        W+PP  G+ K+NVD    +     G+G ++R++RG               A   +++A +EG+R + +   + V +       +K   S    S   G+L
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLT------------AEVGEVLAMLEGLRMTEEFSCSNVWV-------VKKFYSMAFVSSPFGVL

Query:  YVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSS-CSWSANPPLWLSNLIEAEM
        + E  NL+S+ R V   + P+  N+  H L +F +S +   SW  + P+WL  +++A++
Subjt:  YVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSS-CSWSANPPLWLSNLIEAEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-0535.71Show/hide
Query:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTAEVGEVLAMLEGLRMTEEFSCSN-VWVVKKFY
        W PP    LK N DA++H +    GLG I+R+ +G    E G  +   +G   TEE  CS  +W ++  Y
Subjt:  WKPPTEGWLKLNVDATYHLKRPCYGLGGIIRHDRGYLTAEVGEVLAMLEGLRMTEEFSCSN-VWVVKKFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGGACCAGAACCGCATCAAAGAGATATTGCAAACTTATGAAAATGCTTCTGGGTATGGTGTATTTTAACAAATTAGCTATGTTGTTGTTTAGTCCTAAT
GTGTTGTGGTCATCCAAAGCTGAGATGGGAGATATTTTGCAAAATGGGAGAGGCTATGTGGGTGTTGCATCTGGGATAAGGCATGGGTCCTGGAGTTCACCAAGT
GTGGATTTAGGTTCTTCGAGTTTGCCGTGTTGGAAACCACCAACGGAAGGGTGGCTGAAGCTGAACGTTGATGCAACTTATCATTTGAAGAGGCCATGTTATGGG
TTGGGCGGTATCATTAGACACGACCGGGGGTATTTGACAGCAGAAGTTGGGGAGGTCCTTGCGATGCTTGAGGGGCTACGGATGACGGAAGAGTTCAGCTGTTCT
AATGTGTGGGTGGTGAAAAAATTCTATTCCATGGCTTTTGTCTCCTCCCCCTTTGGTGTGCTCTATGTTGAAGTGTACAATTTGATGTCTAGAATTAGAATTGTG
GGGCTTGGTTTTGTGCCTCAAGGTTGTAATCGGGTGATCCATAATTTGCCCAACTTTGTTGTCTCTTCCTCCTCTTGTTCCTGGTCTGCTAATCCCCCACTTTGG
CTTTCCAATCTTATTGAGGCTGAGATGGGGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGGACCAGAACCGCATCAAAGAGATATTGCAAACTTATGAAAATGCTTCTGGGTATGGTGTATTTTAACAAATTAGCTATGTTGTTGTTTAGTCCTAAT
GTGTTGTGGTCATCCAAAGCTGAGATGGGAGATATTTTGCAAAATGGGAGAGGCTATGTGGGTGTTGCATCTGGGATAAGGCATGGGTCCTGGAGTTCACCAAGT
GTGGATTTAGGTTCTTCGAGTTTGCCGTGTTGGAAACCACCAACGGAAGGGTGGCTGAAGCTGAACGTTGATGCAACTTATCATTTGAAGAGGCCATGTTATGGG
TTGGGCGGTATCATTAGACACGACCGGGGGTATTTGACAGCAGAAGTTGGGGAGGTCCTTGCGATGCTTGAGGGGCTACGGATGACGGAAGAGTTCAGCTGTTCT
AATGTGTGGGTGGTGAAAAAATTCTATTCCATGGCTTTTGTCTCCTCCCCCTTTGGTGTGCTCTATGTTGAAGTGTACAATTTGATGTCTAGAATTAGAATTGTG
GGGCTTGGTTTTGTGCCTCAAGGTTGTAATCGGGTGATCCATAATTTGCCCAACTTTGTTGTCTCTTCCTCCTCTTGTTCCTGGTCTGCTAATCCCCCACTTTGG
CTTTCCAATCTTATTGAGGCTGAGATGGGGGAGTAA
Protein sequenceShow/hide protein sequence
MNGTRTASKRYCKLMKMLLGMVYFNKLAMLLFSPNVLWSSKAEMGDILQNGRGYVGVASGIRHGSWSSPSVDLGSSSLPCWKPPTEGWLKLNVDATYHLKRPCYG
LGGIIRHDRGYLTAEVGEVLAMLEGLRMTEEFSCSNVWVVKKFYSMAFVSSPFGVLYVEVYNLMSRIRIVGLGFVPQGCNRVIHNLPNFVVSSSSCSWSANPPLW
LSNLIEAEMGE