; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G013490 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G013490
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionzf-RVT domain-containing protein
Genome locationCG_Chr05:19315310..19316724
RNA-Seq ExpressionClCG05G013490
SyntenyClCG05G013490
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]5.7e-1937.97Show/hide
Query:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEI
        +I SIHG + FDW T GK  +    P ++I++ W+ VD+ A F+L +G RI F    W+G+  +K++FSRLFR++  P  +   F   +  RR L+D+EI
Subjt:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEI

Query:  SGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS
        + F +L+  LS+  V    D R W++E+   F+ KSLS  L+++SP+ K ++ A+  S
Subjt:  SGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS

TYK06564.1 hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa]8.0e-2138.99Show/hide
Query:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL
        ++ SI+G +   WHT+GK  +    P + IS   + ++T   F L +G RI FW  +W+     +  FS LFR+S +PNG+V+  WD      +IM RRL
Subjt:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL

Query:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYK
         K++EIS F  L+  LS+  V+   D R W+L+  S F+ KS    L  SSPL +G YK
Subjt:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYK

TYK22579.1 hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa]3.7e-2644.24Show/hide
Query:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL
        +I SIHG++ FDWHT  K  +    P + IS+ WK V+  APF L +G R+ FW   W     LK + S+LF+++ LP G+V+  WD      AI+ RRL
Subjt:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL

Query:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSA
        LKD+EI  F +L+  LSS  ++   D RIW+L+A   ++VKSLS  L  S PL K  YKALW ++
Subjt:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSA

XP_022155195.1 uncharacterized protein LOC111022333 [Momordica charantia]2.9e-2346.72Show/hide
Query:  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDA------IMTRRLLKDDEISGFVALMEDLSSVSVSVGTDS
        ++IS+ W   + FA F L SG  ILFW H W+ ++ LKD+FS+++++ST P+G+V +FWDA      I TRR LKDDEI  F  L+  L S S S   D 
Subjt:  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDA------IMTRRLLKDDEISGFVALMEDLSSVSVSVGTDS

Query:  RIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS
        R+W+LE    F+V S+S KL S+S L K ++KA+W S
Subjt:  RIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]1.8e-2042.22Show/hide
Query:  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRLLKDDEISGFVALMEDLSSVSVSVGTDS
        + IS++W  V+  A F L +G+RI FW   W G       FS LFR++TLPNG+V+D WD      +I  RR LKD+E+S F  L+  + S S S+  D 
Subjt:  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRLLKDDEISGFVALMEDLSSVSVSVGTDS

Query:  RIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALW
        R+W++   S +TVKSL   L   SPL K I+  +W
Subjt:  RIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALW

TrEMBL top hitse value%identityAlignment
A0A5A7T2Y0 zf-RVT domain-containing protein2.8e-1937.97Show/hide
Query:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEI
        +I SIHG + FDW T GK  +    P ++I++ W+ VD+ A F+L +G RI F    W+G+  +K++FSRLFR++  P  +   F   +  RR L+D+EI
Subjt:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEI

Query:  SGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS
        + F +L+  LS+  V    D R W++E+   F+ KSLS  L+++SP+ K ++ A+  S
Subjt:  SGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS

A0A5D3C5F2 Uncharacterized protein3.9e-2138.99Show/hide
Query:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL
        ++ SI+G +   WHT+GK  +    P + IS   + ++T   F L +G RI FW  +W+     +  FS LFR+S +PNG+V+  WD      +IM RRL
Subjt:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL

Query:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYK
         K++EIS F  L+  LS+  V+   D R W+L+  S F+ KS    L  SSPL +G YK
Subjt:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYK

A0A5D3DE60 zf-RVT domain-containing protein6.8e-1836.71Show/hide
Query:  MISSIHGTDVFDWHTLGK---HQAFEPLDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEI
        +I SIHG + FDW T GK         ++I++ W+ VD+ A F+L +G RI F    W+G+  +K++FSRLF ++  P      F   +  RR L+D+EI
Subjt:  MISSIHGTDVFDWHTLGK---HQAFEPLDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEI

Query:  SGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS
        + F +L+  LS+  V    D R W++E+   F+ KSLS  L+++SP+ K ++ A+  S
Subjt:  SGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS

A0A5D3DH32 Uncharacterized protein1.8e-2644.24Show/hide
Query:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL
        +I SIHG++ FDWHT  K  +    P + IS+ WK V+  APF L +G R+ FW   W     LK + S+LF+++ LP G+V+  WD      AI+ RRL
Subjt:  MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRL

Query:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSA
        LKD+EI  F +L+  LSS  ++   D RIW+L+A   ++VKSLS  L  S PL K  YKALW ++
Subjt:  LKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSA

A0A6J1DLR8 uncharacterized protein LOC1110223331.4e-2346.72Show/hide
Query:  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDA------IMTRRLLKDDEISGFVALMEDLSSVSVSVGTDS
        ++IS+ W   + FA F L SG  ILFW H W+ ++ LKD+FS+++++ST P+G+V +FWDA      I TRR LKDDEI  F  L+  L S S S   D 
Subjt:  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDA------IMTRRLLKDDEISGFVALMEDLSSVSVSVGTDS

Query:  RIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS
        R+W+LE    F+V S+S KL S+S L K ++KA+W S
Subjt:  RIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCTAGTATTCATGGTACTGATGTATTTGATTGGCACACTCTTGGAAAGCATCAAGCCTTCGAACCCCTGGATATATCTCAATCTTGGAAATCTGTGGATACGTT
TGCTCCTTTCTCCTTAAAATCTGGTACAAGAATCCTGTTTTGGCATCATTTGTGGCTCGGTTCAGAGGTTTTAAAAGACAAATTCTCTCGTCTTTTTCGGCTATCCACTT
TGCCAAATGGGGCTGTTAGTGATTTTTGGGATGCTATTATGACTAGGAGACTTTTAAAAGATGATGAAATTTCAGGCTTTGTCGCTCTCATGGAAGATCTTTCATCGGTT
TCAGTTAGTGTTGGGACTGACTCCAGAATTTGGAATTTGGAAGCACCAAGCTCATTTACAGTTAAATCCCTTTCTTGCAAATTAAGATCCTCTTCTCCTTTGACAAAAGG
GATTTACAAGGCTTTATGGCATTCAGCTTATGCATCAAGCCTCGAAAAGCAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCTAGTATTCATGGTACTGATGTATTTGATTGGCACACTCTTGGAAAGCATCAAGCCTTCGAACCCCTGGATATATCTCAATCTTGGAAATCTGTGGATACGTT
TGCTCCTTTCTCCTTAAAATCTGGTACAAGAATCCTGTTTTGGCATCATTTGTGGCTCGGTTCAGAGGTTTTAAAAGACAAATTCTCTCGTCTTTTTCGGCTATCCACTT
TGCCAAATGGGGCTGTTAGTGATTTTTGGGATGCTATTATGACTAGGAGACTTTTAAAAGATGATGAAATTTCAGGCTTTGTCGCTCTCATGGAAGATCTTTCATCGGTT
TCAGTTAGTGTTGGGACTGACTCCAGAATTTGGAATTTGGAAGCACCAAGCTCATTTACAGTTAAATCCCTTTCTTGCAAATTAAGATCCTCTTCTCCTTTGACAAAAGG
GATTTACAAGGCTTTATGGCATTCAGCTTATGCATCAAGCCTCGAAAAGCAAAAGTAA
Protein sequenceShow/hide protein sequence
MISSIHGTDVFDWHTLGKHQAFEPLDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEISGFVALMEDLSSV
SVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSAYASSLEKQK