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ClCG05G013610 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G013610
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA double-strand break repair rad50 ATPase
Genome locationCG_Chr05:19614558..19620280
RNA-Seq ExpressionClCG05G013610
SyntenyClCG05G013610
Gene Ontology termsGO:0005747 - mitochondrial respiratory chain complex I (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY02839.1 DNA double-strand break repair rad50 ATPase [Theobroma cacao]3.8e-1767.47Show/hide
Query:  SLKAHYFDHVIFNRPREEQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        SL  + FD ++ N     + K+  G+K MALTNFILTVAGVSAVVLLLRSDVKQSA+IFRRNVKHIR WLEEES++AS  +EK
Subjt:  SLKAHYFDHVIFNRPREEQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
KAG6588894.1 hypothetical protein SDJN03_17459, partial [Cucurbita argyrosperma subsp. sororia]4.5e-1888.71Show/hide
Query:  QAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        + EGF+ MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Subjt:  QAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
KAG7022659.1 hypothetical protein SDJN02_16393 [Cucurbita argyrosperma subsp. argyrosperma]5.4e-1694.55Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
XP_023531886.1 uncharacterized protein LOC111794015 [Cucurbita pepo subsp. pepo]9.9e-1887.1Show/hide
Query:  QAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        + EGF+ MALTNFILTVAGVSAVV+LLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Subjt:  QAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
XP_038899134.1 uncharacterized protein LOC120086491 [Benincasa hispida]5.4e-1694.55Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
TrEMBL top hitse value%identityAlignment
A0A061EKL3 DNA double-strand break repair rad50 ATPase1.8e-1767.47Show/hide
Query:  SLKAHYFDHVIFNRPREEQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        SL  + FD ++ N     + K+  G+K MALTNFILTVAGVSAVVLLLRSDVKQSA+IFRRNVKHIR WLEEES++AS  +EK
Subjt:  SLKAHYFDHVIFNRPREEQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
A0A6J1DS71 uncharacterized protein LOC1110234005.9e-1690.91Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        MALTNFILTVAGVSAV+LLLRSDVKQSASIFRRNVKHIRQW+EEESASAS   EK
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
A0A6J1FA54 uncharacterized protein LOC1114422027.7e-1692.73Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        MALTNFILTVAGV AVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
A0A6J1J664 uncharacterized protein LOC1114821247.7e-1692.73Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        MALTNFILTVAGV AVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
A0A7J6GS06 Uncharacterized protein1.0e-1590.91Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
        MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIR WLEEESASA+  +EK
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G14105.1 unknown protein1.3e-1571.43Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEKT
        M LTNFILTVAGV AVV+LLRSDVKQS ++ RRNVKHIR WLEEES++AS+++ ++
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEKT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATCACAATTCCTTGAAAGCCCATTATTTCGATCACGTCATCTTCAATCGGCCTCGCGAAGAACAATTGAAGCAGGCTGAAGGATTCAAATACATGGCTTTAAC
GAACTTCATCTTGACGGTGGCCGGAGTTAGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCGGCCTCAATCTTCAGGCGCAACGTCAAGCACATCCGCCAGT
GGCTTGAAGAAGAATCTGCCTCTGCCTCCAATCAATCCGAGAAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATCACAATTCCTTGAAAGCCCATTATTTCGATCACGTCATCTTCAATCGGCCTCGCGAAGAACAATTGAAGCAGGCTGAAGGATTCAAATACATGGCTTTAAC
GAACTTCATCTTGACGGTGGCCGGAGTTAGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCGGCCTCAATCTTCAGGCGCAACGTCAAGCACATCCGCCAGT
GGCTTGAAGAAGAATCTGCCTCTGCCTCCAATCAATCCGAGAAAACATGACCCAAATTCTGGTTGGACCGCGGCTGTTCTCTAAAGCACAAATTTTGTGGCATAATGTAG
TCAAGGCTTTAGTTTTTGAGATTTGGTTTGAAAGAAATGAGCAAGTTTTTAAGCCTTCAAATTGGTCAGATCGGCTTGGTTCTACTCGTTTACTAGCATCTTCATGGAGT
TCCTAGTCAAAGTTCTTTGAAAATTACTTTATTCAGGACATATGTCTTGACTAGAATGCGCCTATTCTCTATGTAATCATGTTACTAAGTTATCTTAGTAGATTTCTTTG
CAAACGGATATGATGAGGGTGCTAAAGATGTGTTAACCTAGTTGAGATATTTGGGTGCACCTCTTGATCCTTAGTTTCTATATTCTTGTAATTTTGTTTCACTATATCCT
GAGCATTAGTCTCTTTTCGTTTCATCAATGAAAAGTTATATTTCTGTTTAAAAAAATAATAATAATAAATAAATAAATTAAAAGTTCTCTTGGGAATACTTCACCGACTG
GGAAGTCGGGCTCCTATTGGCATATTTCCTTAGCCTCTAGCCTCTAGAATCTCATATCTGTTTCCTTGTTTTTTTAATTATTATTATTATTGTTATTTTAATGGTATTAG
ATCCAATAGCATAATATTAGCAAGTTTAATGTAGTGTAGTTATGTTTGGCCAGAAGAATATTTGAGTTGGTGAGTGAAGAATATGACAGATGCATAAATAGAAAGTAATA
TAAGAAGAAAAGATATCAAGCTTATGGGTTATGGCGATTTCATGGAACCCGTGTCTTTAAGTTCTCCATTTTGGCATGTGAATGCAACAGGCTGGTGCTCGTTTTGTAGG
CCATACTTTTGTAATGTAAATACGATTGTGATGTTCTTTCAGGACTGTGGAGAAAACAACCAAGGAGCTGGAAGCCAAGACTTCTCATAAAGATATTCCCAAAGACGACA
AGCACTAATGTCAATATTGGTCGTTTAGCAATTTATTTTGGTCTCTATCTAATAGGAGTGTTCAGCAAGATGATGGGAATGTTGACTGGATATTTATTTATTGGCTAGGG
GTGTCTTAACGTATGTGGTTTATTGTAATGCCACGATTGGATTGAAAAGAAATATTTGTTTGTTTATTATTGTAGGAGCTTAGGGTAGGGACCCATCTTCTCTTATCTTT
CCTTTTCTCCATTAAAAGGGATTTATTTTTGGATAAATACTCCCAACCTACCAAATGCCCCCACCAAATTCCTCATGTTGTCATCTCCCAAATAATGACTCCCCCCAATA
GGAACATACTTCTCTAGCTTTACAAGGTTCCTCCTCTAGTTTACTTTAATTTCTTGTTTTGATTATGGTTTGTAAAACCTAACACAAATTTGGCACACAATGAAAACTCT
TTAGTTGTACTTATAAAAAAAACTCTTTAGTTTGTTTTTGTTT
Protein sequenceShow/hide protein sequence
MDNHNSLKAHYFDHVIFNRPREEQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEKT