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ClCG05G013790 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G013790
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon gag protein
Genome locationCG_Chr05:21410814..21422043
RNA-Seq ExpressionClCG05G013790
SyntenyClCG05G013790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026300.1 uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa]7.6e-0632.88Show/hide
Query:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF
        ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE+DDEGW +   ++VV  + I  T  E    + +E+     
Subjt:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF

Query:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY
        D ++ + D   S P+      I A  +  A   CAL +   N KFY
Subjt:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY

KAA0054592.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-0444.78Show/hide
Query:  LIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL
        +I HPVE  FVLKEL+LR          L      + +VVRF  E+   DS+EK++ IE+DDEGW +
Subjt:  LIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL

TYK16284.1 uncharacterized protein E5676_scaffold21G00550 [Cucumis melo var. makuwa]6.4e-0550Show/hide
Query:  LIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL
        LI HP+E +FVLKEL   K G   + + +VV+F  E+   DS+EK++ IE+DDEGWI+
Subjt:  LIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL

TYK21493.1 uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]7.6e-0632.88Show/hide
Query:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF
        ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE+DDEGW +   ++VV  + I  T  E    + +E+     
Subjt:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF

Query:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY
        D ++ + D   S P+      I A  +  A   CAL +   N KFY
Subjt:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY

TYK22678.1 uncharacterized protein E5676_scaffold195G001240 [Cucumis melo var. makuwa]1.7e-0545.33Show/hide
Query:  LIRHPVENYFVLKELVLRK-LGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHITTGE
        +I HPVE  FVLKEL+LR+ L      + +VVRF  E+   DS+EK++ IE+DDEGW +     VV  + I   E
Subjt:  LIRHPVENYFVLKELVLRK-LGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHITTGE

TrEMBL top hitse value%identityAlignment
A0A5A7SJC0 Ribonuclease H3.7e-0632.88Show/hide
Query:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF
        ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE+DDEGW +   ++VV  + I  T  E    + +E+     
Subjt:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF

Query:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY
        D ++ + D   S P+      I A  +  A   CAL +   N KFY
Subjt:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY

A0A5D3CZ99 Reverse transcriptase domain-containing protein3.1e-0550Show/hide
Query:  LIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL
        LI HP+E +FVLKEL   K G   + + +VV+F  E+   DS+EK++ IE+DDEGWI+
Subjt:  LIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL

A0A5D3DD54 Ribonuclease H3.7e-0632.88Show/hide
Query:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF
        ++I H V+  FVLKEL+LR          L      + IVV+F  E+   DS+EK++ IE+DDEGW +   ++VV  + I  T  E    + +E+     
Subjt:  FLIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHI--TTGEVDDSKEIEQRTSVF

Query:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY
        D ++ + D   S P+      I A  +  A   CAL +   N KFY
Subjt:  DHIKLS-DTQSSLPK------IGATESVVAPPRCALDLRASNLKFY

A0A5D3DGT6 Reverse transcriptase domain-containing protein8.2e-0645.33Show/hide
Query:  LIRHPVENYFVLKELVLRK-LGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHITTGE
        +I HPVE  FVLKEL+LR+ L      + +VVRF  E+   DS+EK++ IE+DDEGW +     VV  + I   E
Subjt:  LIRHPVENYFVLKELVLRK-LGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHITTGE

A0A5D3DV04 Retrotransposon gag protein9.1e-0544.78Show/hide
Query:  LIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL
        +I HPVE  FVLKEL+LR          L      + +VVRF  E+   DS+EK++ IE+DDEGW +
Subjt:  LIRHPVENYFVLKELVLR---------KLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTGAGCCTCACCAACAGGGGAACAAAAGATTTCCTAATCAGACATCCAGTTGAAAACTACTTCGTTCTTAAAGAGTTGGTCCTAAGAAAGCTTGGTCCAATTTG
GGACCTTCAAGCCATAGTTGTTCGGTTCCAACATGAGATTCCAACGACAGACTCCAAAGAAAAAGATAAGCCTATTGAAGATGACGATGAGGGGTGGATCCTTAAGGGCA
AGATAAAAGTTGTCGACAACAATCATATAACTACTGGAGAAGTCGACGATTCAAAAGAAATTGAGCAAAGAACTTCTGTCTTCGATCATATCAAGCTTTCAGATACTCAA
TCAAGTCTTCCAAAGATTGGCGCAACCGAGAGCGTCGTTGCACCGCCCCGCTGCGCCCTAGACTTGAGAGCATCAAATTTGAAATTCTACTGGAGCGTCGTTGCACTTGT
CGAGAGCATCGCTCGCGGCGTCCTCCAACCCCCTGCCTCTTCCATTGCACCATCGTCCGGCTCAAAACCTAGCCGCACGCTAGCATCGTTCATGATTGGATCCCACTCGA
GTCGCCCAGCTGCTCGTCAATGCGTTCAGCTACTTGTCGTCGGTCGCGCCGCCCAGCCAATCGTTTTTCGTCGGTTTGAACTGCATTTTGTCATCGGTTGTTTTGTTCGC
CAGCCACTATTGCCTCCTTATCGTTCCTTGTACTCCACTATAGAGCTCACTTTTTCACCAACTTTTGTTGTGTTGCAGAGCTCAATCTCAAGCATGGTAGAGGAAAACAA
GATCCCTAAGCATTTTTACCGTAACGGCGAGTCACCAGGCCGAATCAAGCAGCGGGGCAGCATTGAGATAAGCCATCACCACATATTGCTACCAAATAGGCTGTTGTCAT
TTTTCAATTCTCAAAGGCTCCAACACTTGAAAAGGCTCGGCCAACAAGCATTCTCAACCGCTCTGATTGCTCCAATTTACCCTTTAAAATCACTTTTCCGCAGAAGGCTG
CTCATTCCCACCCGTCAAGAACATATTCTCATATTACTGTCATGGGTCTTGTTTATTGTGACACCTGCTCCAACAACACCTTCTCCAAACACAGTTACTTCTTATCAGGT
GCAGAAGTTCGAATCGACTGCAAATTCAAAGCAGAAACGCCGCGTACGGCGGAGCAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTGAGCCTCACCAACAGGGGAACAAAAGATTTCCTAATCAGACATCCAGTTGAAAACTACTTCGTTCTTAAAGAGTTGGTCCTAAGAAAGCTTGGTCCAATTTG
GGACCTTCAAGCCATAGTTGTTCGGTTCCAACATGAGATTCCAACGACAGACTCCAAAGAAAAAGATAAGCCTATTGAAGATGACGATGAGGGGTGGATCCTTAAGGGCA
AGATAAAAGTTGTCGACAACAATCATATAACTACTGGAGAAGTCGACGATTCAAAAGAAATTGAGCAAAGAACTTCTGTCTTCGATCATATCAAGCTTTCAGATACTCAA
TCAAGTCTTCCAAAGATTGGCGCAACCGAGAGCGTCGTTGCACCGCCCCGCTGCGCCCTAGACTTGAGAGCATCAAATTTGAAATTCTACTGGAGCGTCGTTGCACTTGT
CGAGAGCATCGCTCGCGGCGTCCTCCAACCCCCTGCCTCTTCCATTGCACCATCGTCCGGCTCAAAACCTAGCCGCACGCTAGCATCGTTCATGATTGGATCCCACTCGA
GTCGCCCAGCTGCTCGTCAATGCGTTCAGCTACTTGTCGTCGGTCGCGCCGCCCAGCCAATCGTTTTTCGTCGGTTTGAACTGCATTTTGTCATCGGTTGTTTTGTTCGC
CAGCCACTATTGCCTCCTTATCGTTCCTTGTACTCCACTATAGAGCTCACTTTTTCACCAACTTTTGTTGTGTTGCAGAGCTCAATCTCAAGCATGGTAGAGGAAAACAA
GATCCCTAAGCATTTTTACCGTAACGGCGAGTCACCAGGCCGAATCAAGCAGCGGGGCAGCATTGAGATAAGCCATCACCACATATTGCTACCAAATAGGCTGTTGTCAT
TTTTCAATTCTCAAAGGCTCCAACACTTGAAAAGGCTCGGCCAACAAGCATTCTCAACCGCTCTGATTGCTCCAATTTACCCTTTAAAATCACTTTTCCGCAGAAGGCTG
CTCATTCCCACCCGTCAAGAACATATTCTCATATTACTGTCATGGGTCTTGTTTATTGTGACACCTGCTCCAACAACACCTTCTCCAAACACAGTTACTTCTTATCAGGT
GCAGAAGTTCGAATCGACTGCAAATTCAAAGCAGAAACGCCGCGTACGGCGGAGCAGATAG
Protein sequenceShow/hide protein sequence
MKLSLTNRGTKDFLIRHPVENYFVLKELVLRKLGPIWDLQAIVVRFQHEIPTTDSKEKDKPIEDDDEGWILKGKIKVVDNNHITTGEVDDSKEIEQRTSVFDHIKLSDTQ
SSLPKIGATESVVAPPRCALDLRASNLKFYWSVVALVESIARGVLQPPASSIAPSSGSKPSRTLASFMIGSHSSRPAARQCVQLLVVGRAAQPIVFRRFELHFVIGCFVR
QPLLPPYRSLYSTIELTFSPTFVVLQSSISSMVEENKIPKHFYRNGESPGRIKQRGSIEISHHHILLPNRLLSFFNSQRLQHLKRLGQQAFSTALIAPIYPLKSLFRRRL
LIPTRQEHILILLSWVLFIVTPAPTTPSPNTVTSYQVQKFESTANSKQKRRVRRSR