; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G014380 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G014380
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCG_Chr05:24179962..24183340
RNA-Seq ExpressionClCG05G014380
SyntenyClCG05G014380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7947748.1 hypothetical protein I3843_14G109500 [Carya illinoinensis]1.5e-1242.7Show/hide
Query:  SQRGRLRGQGPRMETNRSTYMASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY
        ++  +LR +  + + N    +  AWERYK+L+R+C QH   DWL +++FYNGL+  T+ I++A +GG + SKT E A  LLE+M + NY
Subjt:  SQRGRLRGQGPRMETNRSTYMASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.5e-1755.81Show/hide
Query:  RLRGQGPRMETNRSTYMASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNYN
        RLR +           +  AWERYK+LLR+C QH Y DWL I+LFYNGL+S+TK+IL+A AGG IFSK  +EA+T+LED+  T+YN
Subjt:  RLRGQGPRMETNRSTYMASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNYN

WP_217860865.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]6.0e-1455.7Show/hide
Query:  RLRGQGPRMETNRSTYMASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLED
        RLR +           +  AWERYK+LLR+C QH Y DWL I+LFYNGL S+TK+IL+A A G IFSK  +EA+T+LED
Subjt:  RLRGQGPRMETNRSTYMASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLED

XP_015898121.1 uncharacterized protein LOC107431659 [Ziziphus jujuba]1.0e-1354.29Show/hide
Query:  MASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNYN
        M  AWER+KELLRKC QH Y +W+LI LFYNGL+  TK ++N+ A G + +KTV+EA+ LLE+M +++++
Subjt:  MASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNYN

XP_024030839.1 uncharacterized protein LOC112094384 [Morus notabilis]8.6e-1359.09Show/hide
Query:  AWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY
        AWERYKE+LRKC  H   DWL +  FYNGL  TT+ +++A AGG   SKT EEA+ LLEDM A  Y
Subjt:  AWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY

TrEMBL top hitse value%identityAlignment
A0A6J1B036 uncharacterized protein LOC1104228061.8e-1150Show/hide
Query:  ASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY
        A +WER+KELLR+C  H   DWL ++ FYNGL  + K I++A AGG + SK   +A+ LLE+M + NY
Subjt:  ASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY

A0A6J1DU19 uncharacterized protein LOC1110243611.2e-1256.92Show/hide
Query:  WERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY
        WERYKELLRKC QH  L+WL I++FYNGL+  T+ IL+A AGG + S+T E A+ LL+DM   ++
Subjt:  WERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY

A0A6P4BN28 uncharacterized protein LOC1074316594.9e-1454.29Show/hide
Query:  MASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNYN
        M  AWER+KELLRKC QH Y +W+LI LFYNGL+  TK ++N+ A G + +KTV+EA+ LLE+M +++++
Subjt:  MASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNYN

A0A6P6S3L6 uncharacterized protein LOC1136873581.8e-1150.77Show/hide
Query:  WERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY
        WER++ELLR+C  H   DWL+++ FYNGLS +TK  ++A AGG +  K+ +EA +L+E+M A NY
Subjt:  WERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY

A0A6P6T1H4 uncharacterized protein LOC1136966881.3e-1153.03Show/hide
Query:  AWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY
        AWERY+EL R+C  H   DWL++++FYNGL+  TK  ++A AGG +  KT EEA  L+E+M A NY
Subjt:  AWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAVAGGLIFSKTVEEAWTLLEDMEATNY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACTCAGGGGCCATTTTGCCCTGAGGCATGTACCATGGAGCAAAAACTCGGGAGGGTGGATTGCAATGGTGTTGTAACGCTGCCCTTGAGCGTTGTGGCGCTCCG
AAAATTGGAGAGGATTGATGGGAGACAAAGTCAGAGAGGACGATTGAGAGGTCAAGGTCCAAGGATGGAAACAAATCGATCAACATATATGGCATCGGCTTGGGAGCGCT
ACAAGGAGTTGCTAAGGAAGTGCCATCAGCACGACTACCTAGATTGGTTGCTGATCAAACTATTCTATAATGGGCTATCCAGCACCACTAAGGCAATACTCAATGCCGTA
GCAGGAGGTTTGATATTTTCGAAAACTGTTGAGGAGGCTTGGACTTTGTTGGAGGATATGGAAGCCACAAACTACAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGACTCAGGGGCCATTTTGCCCTGAGGCATGTACCATGGAGCAAAAACTCGGGAGGGTGGATTGCAATGGTGTTGTAACGCTGCCCTTGAGCGTTGTGGCGCTCCG
AAAATTGGAGAGGATTGATGGGAGACAAAGTCAGAGAGGACGATTGAGAGGTCAAGGTCCAAGGATGGAAACAAATCGATCAACATATATGGCATCGGCTTGGGAGCGCT
ACAAGGAGTTGCTAAGGAAGTGCCATCAGCACGACTACCTAGATTGGTTGCTGATCAAACTATTCTATAATGGGCTATCCAGCACCACTAAGGCAATACTCAATGCCGTA
GCAGGAGGTTTGATATTTTCGAAAACTGTTGAGGAGGCTTGGACTTTGTTGGAGGATATGGAAGCCACAAACTACAACTAG
Protein sequenceShow/hide protein sequence
MKTQGPFCPEACTMEQKLGRVDCNGVVTLPLSVVALRKLERIDGRQSQRGRLRGQGPRMETNRSTYMASAWERYKELLRKCHQHDYLDWLLIKLFYNGLSSTTKAILNAV
AGGLIFSKTVEEAWTLLEDMEATNYN