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ClCG05G014520 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G014520
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCG_Chr05:24569035..24574220
RNA-Seq ExpressionClCG05G014520
SyntenyClCG05G014520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049880.1 uncharacterized protein E6C27_scaffold13G00270 [Cucumis melo var. makuwa]4.3e-1237.5Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY
        +T+ N G FYPQLI+E IV+ P++FNDPS LDYQ                                         K+GIANW PS+H S +S  L   LY
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY

Query:  QIGTRSTFNFGGFVFNQLLR
        QI    + + G F++NQLLR
Subjt:  QIGTRSTFNFGGFVFNQLLR

KAA0050593.1 uncharacterized protein E6C27_scaffold673G00530 [Cucumis melo var. makuwa]2.1e-1140.91Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-------------------------------KIGIANWCPSTHGSGLSPILAILLYQIGTRSTFNF
        +T+ + G FYPQLIRE IV+ PA FNDPSS D+Q                               KIGIANW PS+H S +S  L   LYQI      + 
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-------------------------------KIGIANWCPSTHGSGLSPILAILLYQIGTRSTFNF

Query:  GGFVFNQLLR
          F++NQLLR
Subjt:  GGFVFNQLLR

KAA0051794.1 uncharacterized protein E6C27_scaffold60G002030 [Cucumis melo var. makuwa]3.6e-1137.5Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY
        +T+ N G FYPQL++E IV+ PA FNDPSS DYQ                                         KIGIANW PS+H S +S  L   LY
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY

Query:  QIGTRSTFNFGGFVFNQLLR
         I      + G F++NQLLR
Subjt:  QIGTRSTFNFGGFVFNQLLR

TYK21447.1 uncharacterized protein E5676_scaffold609G001170 [Cucumis melo var. makuwa]3.6e-1137.5Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY
        +T+ N G FYPQL++E IV+ PA FNDPSS DYQ                                         KIGIANW PS+H S +S  L   LY
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY

Query:  QIGTRSTFNFGGFVFNQLLR
         I      + G F++NQLLR
Subjt:  QIGTRSTFNFGGFVFNQLLR

XP_038904247.1 uncharacterized protein LOC120090596 [Benincasa hispida]1.4e-1845.9Show/hide
Query:  LRTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQKI------------------------------------------GIANWCPSTHGSGLSPILAIL
        L+TV+N   FYPQL+RELIV+ P++F+DP++ DY+KI                                          GIANWCPSTHGS LSP LA L
Subjt:  LRTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQKI------------------------------------------GIANWCPSTHGSGLSPILAIL

Query:  LYQIGTRSTFNFGGFVFNQLLR
        LYQIG  STFNF  FV+NQL R
Subjt:  LYQIGTRSTFNFGGFVFNQLLR

TrEMBL top hitse value%identityAlignment
A0A5A7U3M8 Uncharacterized protein2.1e-1237.5Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY
        +T+ N G FYPQLI+E IV+ P++FNDPS LDYQ                                         K+GIANW PS+H S +S  L   LY
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY

Query:  QIGTRSTFNFGGFVFNQLLR
        QI    + + G F++NQLLR
Subjt:  QIGTRSTFNFGGFVFNQLLR

A0A5A7U3Z7 Uncharacterized protein1.0e-1140.91Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-------------------------------KIGIANWCPSTHGSGLSPILAILLYQIGTRSTFNF
        +T+ + G FYPQLIRE IV+ PA FNDPSS D+Q                               KIGIANW PS+H S +S  L   LYQI      + 
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-------------------------------KIGIANWCPSTHGSGLSPILAILLYQIGTRSTFNF

Query:  GGFVFNQLLR
          F++NQLLR
Subjt:  GGFVFNQLLR

A0A5A7U8Y1 Reverse transcriptase Ty1/copia-type domain-containing protein1.8e-1137.5Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY
        +T+ N G FYPQL++E IV+ PA FNDPSS DYQ                                         KIGIANW PS+H S +S  L   LY
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY

Query:  QIGTRSTFNFGGFVFNQLLR
         I      + G F++NQLLR
Subjt:  QIGTRSTFNFGGFVFNQLLR

A0A5A7VE32 Putative mitochondrial protein6.7e-1138.89Show/hide
Query:  LRTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQK------------------------------IGIANWCPSTHGSGLSPILAILLYQIGTRSTFNF
        LRT+   G FYPQL+ ELIV+ P+ FNDPS  +YQK                              IGI+NW PSTH S +S  L   +Y +GT    N 
Subjt:  LRTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQK------------------------------IGIANWCPSTHGSGLSPILAILLYQIGTRSTFNF

Query:  GGFVFNQL
        G F+F  L
Subjt:  GGFVFNQL

A0A5D3DCR2 Reverse transcriptase Ty1/copia-type domain-containing protein1.8e-1137.5Show/hide
Query:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY
        +T+ N G FYPQL++E IV+ PA FNDPSS DYQ                                         KIGIANW PS+H S +S  L   LY
Subjt:  RTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQ-----------------------------------------KIGIANWCPSTHGSGLSPILAILLY

Query:  QIGTRSTFNFGGFVFNQLLR
         I      + G F++NQLLR
Subjt:  QIGTRSTFNFGGFVFNQLLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAGAACGGTGATAAATTTTGGTTCTTTTTATCCTCAACTCATTCGTGAATTGATTGTGGACTCACCTGCTCAATTTAATGATCCTAGCAGCCTAGATTATCAA
AAGATTGGCATTGCAAATTGGTGCCCCTCGACTCATGGATCTGGCTTGTCTCCTATTTTGGCTATTCTACTTTATCAGATTGGTACTCGTTCAACCTTCAATTTT
GGTGGTTTTGTCTTCAATCAATTATTGCGC
mRNA sequenceShow/hide mRNA sequence
TTGAGAACGGTGATAAATTTTGGTTCTTTTTATCCTCAACTCATTCGTGAATTGATTGTGGACTCACCTGCTCAATTTAATGATCCTAGCAGCCTAGATTATCAA
AAGATTGGCATTGCAAATTGGTGCCCCTCGACTCATGGATCTGGCTTGTCTCCTATTTTGGCTATTCTACTTTATCAGATTGGTACTCGTTCAACCTTCAATTTT
GGTGGTTTTGTCTTCAATCAATTATTGCGC
Protein sequenceShow/hide protein sequence
LRTVINFGSFYPQLIRELIVDSPAQFNDPSSLDYQKIGIANWCPSTHGSGLSPILAILLYQIGTRSTFNFGGFVFNQLLR