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ClCG05G014710 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G014710
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr05:25142253..25142967
RNA-Seq ExpressionClCG05G014710
SyntenyClCG05G014710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032859.1 retrotransposon protein [Cucumis melo var. makuwa]9.4e-2338.83Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD
        RA +H+WT EE+  LVECL++ V  G W++DNGTFRP +L+ ++RM+ +++PGC   A  G G       ++  +     ++    +AKGL +K FPYYD
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD

Query:  DLAIVFGKDKATGNHATTTAKVGS-EP-------VMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPSG-----RGSGSSF
        +L  VFG+D+ATG  A T A VGS EP        M + NED L   S   +   + D   AS P       T S      RGS   F
Subjt:  DLAIVFGKDKATGNHATTTAKVGS-EP-------VMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPSG-----RGSGSSF

KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-2336.31Show/hide
Query:  SGSHARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQRYLTHGSSAKGLRHKSFPYY
        + ++ +A +H WT  ED  LVECL+Q ++ G WR DNGTF+ R+L  I ++++++I G +IQ    L       + I++++Y  H  + + L +K FPY+
Subjt:  SGSHARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQRYLTHGSSAKGLRHKSFPYY

Query:  DDLAIVFGKDKATGNHATTTAKVGSEPVMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPS
         DL +VFG+D+ATG    T+ ++GS+ V + E +D+      N E+F I +P     P  ED  +TP+
Subjt:  DDLAIVFGKDKATGNHATTTAKVGSEPVMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPS

KAA0056586.1 retrotransposon protein [Cucumis melo var. makuwa]9.4e-2340.54Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVV--------------GLGEMQSANVLIV--RQRYLTHGSSA
        RA +++WT EE+  LVECL++ V  G W++DNGTFRPR+L+ ++RM+ +++PGC ++A                 + E++S   + +    +  +H  +A
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVV--------------GLGEMQSANVLIV--RQRYLTHGSSA

Query:  KGLRHKSFPYYDDLAIVFGKDKATGNHATTTAKVGS-EPVMEEENEDI
        KGL +K FPYYD+L  VFG+D+ATG  A T A VGS EP  E +  D+
Subjt:  KGLRHKSFPYYDDLAIVFGKDKATGNHATTTAKVGS-EPVMEEENEDI

KAA0062976.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-2344.35Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD
        RA +H+ T EE+  LVECL++ V  G W++DNGTFRP +L+ ++RM+ +++PGC   A  G G       +I  +     ++    +AKGL +K FPYYD
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD

Query:  DLAIVFGKDKATGNHATTTAKVGS
        +L  VFG+D+ATG  A T A VGS
Subjt:  DLAIVFGKDKATGNHATTTAKVGS

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]3.2e-2337.36Show/hide
Query:  SHARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVV-------------------------GLGEMQSANVLI
        S +RA KH+WT EE+  LVEC+V+ V +G W++DNGTFRP +L+ +LRM+  ++PGC++ A                           G G    A  +I
Subjt:  SHARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVV-------------------------GLGEMQSANVLI

Query:  VRQRYLTH----GSSAKGLRHKSFPYYDDLAIVFGKDKATGNHATTTAKVGSEPVMEEENEDILNNQSPNFENF
          + +  +      +AKGL +K FPYYD  A VFGKD+A G H  T A VGS             N  P FE F
Subjt:  VRQRYLTH----GSSAKGLRHKSFPYYDDLAIVFGKDKATGNHATTTAKVGSEPVMEEENEDILNNQSPNFENF

TrEMBL top hitse value%identityAlignment
A0A5A7SUL5 Retrotransposon protein4.5e-2338.83Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD
        RA +H+WT EE+  LVECL++ V  G W++DNGTFRP +L+ ++RM+ +++PGC   A  G G       ++  +     ++    +AKGL +K FPYYD
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD

Query:  DLAIVFGKDKATGNHATTTAKVGS-EP-------VMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPSG-----RGSGSSF
        +L  VFG+D+ATG  A T A VGS EP        M + NED L   S   +   + D   AS P       T S      RGS   F
Subjt:  DLAIVFGKDKATGNHATTTAKVGS-EP-------VMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPSG-----RGSGSSF

A0A5A7U3R2 Retrotransposon protein1.6e-2336.31Show/hide
Query:  SGSHARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQRYLTHGSSAKGLRHKSFPYY
        + ++ +A +H WT  ED  LVECL+Q ++ G WR DNGTF+ R+L  I ++++++I G +IQ    L       + I++++Y  H  + + L +K FPY+
Subjt:  SGSHARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQRYLTHGSSAKGLRHKSFPYY

Query:  DDLAIVFGKDKATGNHATTTAKVGSEPVMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPS
         DL +VFG+D+ATG    T+ ++GS+ V + E +D+      N E+F I +P     P  ED  +TP+
Subjt:  DDLAIVFGKDKATGNHATTTAKVGSEPVMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPS

A0A5A7UQK4 Retrotransposon protein4.5e-2340.54Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVV--------------GLGEMQSANVLIV--RQRYLTHGSSA
        RA +++WT EE+  LVECL++ V  G W++DNGTFRPR+L+ ++RM+ +++PGC ++A                 + E++S   + +    +  +H  +A
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVV--------------GLGEMQSANVLIV--RQRYLTHGSSA

Query:  KGLRHKSFPYYDDLAIVFGKDKATGNHATTTAKVGS-EPVMEEENEDI
        KGL +K FPYYD+L  VFG+D+ATG  A T A VGS EP  E +  D+
Subjt:  KGLRHKSFPYYDDLAIVFGKDKATGNHATTTAKVGS-EPVMEEENEDI

A0A5A7V951 Retrotransposon protein3.5e-2344.35Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD
        RA +H+ T EE+  LVECL++ V  G W++DNGTFRP +L+ ++RM+ +++PGC   A  G G       +I  +     ++    +AKGL +K FPYYD
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD

Query:  DLAIVFGKDKATGNHATTTAKVGS
        +L  VFG+D+ATG  A T A VGS
Subjt:  DLAIVFGKDKATGNHATTTAKVGS

A0A5D3CYL4 Retrotransposon protein1.0e-2243.55Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD
        RA +H+ T EE+  LVECL++ V  G W++DNGTFRP +L+ ++RM+ +++PGC      G G       +I  +     ++    +AKGL +K FPYYD
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQ----RYLTHGSSAKGLRHKSFPYYD

Query:  DLAIVFGKDKATGNHATTTAKVGS
        +L  VFG+D+ATG  A T A VGS
Subjt:  DLAIVFGKDKATGNHATTTAKVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCATCCGGGTCACACGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCG
AGCTGATAACGGGACTTTCCGACCTAGATTCCTATCAAACATACTACGGATGATACAGCAGAGGATACCAGGGTGTTCCATACAGGCTGTAGTGGGTTTGGGTGAAATGC
AGAGCGCAAATGTATTGATTGTGAGACAGAGATATTTGACGCATGGGTCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTC
GGCAAAGACAAAGCCACAGGGAATCATGCAACCACCACTGCAAAGGTTGGATCTGAACCTGTTATGGAAGAGGAGAACGAAGACATCTTGAACAACCAATCCCCAAACTT
TGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTTTTCAACTACCCCCAGCGGTAGAGGGTCTGGGAGTAGCTTTCAATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCATCCGGGTCACACGCAAGAGCCGCAAAACATATATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCG
AGCTGATAACGGGACTTTCCGACCTAGATTCCTATCAAACATACTACGGATGATACAGCAGAGGATACCAGGGTGTTCCATACAGGCTGTAGTGGGTTTGGGTGAAATGC
AGAGCGCAAATGTATTGATTGTGAGACAGAGATATTTGACGCATGGGTCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTC
GGCAAAGACAAAGCCACAGGGAATCATGCAACCACCACTGCAAAGGTTGGATCTGAACCTGTTATGGAAGAGGAGAACGAAGACATCTTGAACAACCAATCCCCAAACTT
TGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTTTTCAACTACCCCCAGCGGTAGAGGGTCTGGGAGTAGCTTTCAATACTAA
Protein sequenceShow/hide protein sequence
MEASGSHARAAKHIWTDEEDRILVECLVQCVQSGHWRADNGTFRPRFLSNILRMIQQRIPGCSIQAVVGLGEMQSANVLIVRQRYLTHGSSAKGLRHKSFPYYDDLAIVF
GKDKATGNHATTTAKVGSEPVMEEENEDILNNQSPNFENFYIPDPPFASSPPSEDFSTTPSGRGSGSSFQY