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ClCG05G014925 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G014925
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationCG_Chr05:25974426..25976178
RNA-Seq ExpressionClCG05G014925
SyntenyClCG05G014925
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR004330 - FAR1 DNA binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOA14722.1 hypothetical protein CARUB_v10028009mg [Capsella rubella]3.1e-1560Show/hide
Query:  HTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK
        HTV    S P   ++R GC A++ C L K+GKYKIVSF   HNHDLVRTPMKH+L+ NR IS +QK  A DAD SGIS K
Subjt:  HTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK

XP_010418903.1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Camelina sativa]1.8e-1564.38Show/hide
Query:  SPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQ
        S S  V+R GC A++AC L +N KYKIVSF   HNH+LVRTPMKH+L+VNR IS +QK  A+DAD SGIS KQ
Subjt:  SPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQ

XP_021818769.1 protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Prunus avium]1.1e-1563.77Show/hide
Query:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS
        S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQKA    AD+S
Subjt:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS

XP_021818770.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Prunus avium]1.1e-1563.77Show/hide
Query:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS
        S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQKA    AD+S
Subjt:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS

XP_024178689.1 protein FAR1-RELATED SEQUENCE 5-like [Rosa chinensis]3.1e-1552.33Show/hide
Query:  TKDFANHTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK
        +K+    T   G +S S+ V+R GCKA+++C    NGK KIVSF   HNH+L++TPMKH+L++NRS S+AQK  A DA+ SGIS K
Subjt:  TKDFANHTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK

TrEMBL top hitse value%identityAlignment
A0A3P6BDE8 FAR1 domain-containing protein1.7e-1460.29Show/hide
Query:  SRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQP
        +R GCKA ++C L  NG+YKI++F   HNHDLVRTPMKH+++ NR+IS +QK  A DAD SGI  KQP
Subjt:  SRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQP

A0A6P5SPE9 Protein FAR1-RELATED SEQUENCE5.2e-1663.77Show/hide
Query:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS
        S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQKA    AD+S
Subjt:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS

A0A6P5SRI4 Protein FAR1-RELATED SEQUENCE5.2e-1663.77Show/hide
Query:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS
        S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQKA    AD+S
Subjt:  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRS

R0EZH3 Protein FAR1-RELATED SEQUENCE1.5e-1560Show/hide
Query:  HTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK
        HTV    S P   ++R GC A++ C L K+GKYKIVSF   HNHDLVRTPMKH+L+ NR IS +QK  A DAD SGIS K
Subjt:  HTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK

V4KG79 Protein FAR1-RELATED SEQUENCE (Fragment)1.7e-1456.96Show/hide
Query:  TVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK
        TV N  S P   ++R GCKA++ C L K G+YKIVSF+  HNHDLV+TPMKH+L+ N+++S AQK  A DA+ SGIS K
Subjt:  TVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTK

SwissProt top hitse value%identityAlignment
Q9SZL8 Protein FAR1-RELATED SEQUENCE 55.7e-0431.88Show/hide
Query:  SVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQ
        +++R GCKA+++  +  +GK+ +  F   HNH+LV     H LR +R IS   K L      +G+  ++
Subjt:  SVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQ

Arabidopsis top hitse value%identityAlignment
AT4G38180.1 FAR1-related sequence 54.1e-0531.88Show/hide
Query:  SVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQ
        +++R GCKA+++  +  +GK+ +  F   HNH+LV     H LR +R IS   K L      +G+  ++
Subjt:  SVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGTGTTTATGAAGAATTCAATGAAGTTGAAGGGGAGAGGGTTTTTATTGTTCTGTATAGATTTAACCGTAATGGCAGGGAGGTCATTGTTGTACCGCAGAG
AATGACGGAGGTTGGACAGAACTTGACAACGAAAGACTTCGCTAACCACACAGTGGGGAACGGATCATCATCGCCATCTATTTCAGTATCAAGAACAGGATGTAAAGCTA
ATATAGCATGCTTGCTTGGAAAGAATGGTAAGTACAAAATAGTGTCATTTAATGGATATCACAATCACGACCTTGTTAGAACACCAATGAAGCACATTTTAAGAGTCAAT
AGAAGCATATCTCGTGCCCAAAAGGCTCTAGCTTATGATGCAGACAGATCAGGAATTTCAACAAAGCAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTTGTGTTTATGAAGAATTCAATGAAGTTGAAGGGGAGAGGGTTTTTATTGTTCTGTATAGATTTAACCGTAATGGCAGGGAGGTCATTGTTGTACCGCAGAG
AATGACGGAGGTTGGACAGAACTTGACAACGAAAGACTTCGCTAACCACACAGTGGGGAACGGATCATCATCGCCATCTATTTCAGTATCAAGAACAGGATGTAAAGCTA
ATATAGCATGCTTGCTTGGAAAGAATGGTAAGTACAAAATAGTGTCATTTAATGGATATCACAATCACGACCTTGTTAGAACACCAATGAAGCACATTTTAAGAGTCAAT
AGAAGCATATCTCGTGCCCAAAAGGCTCTAGCTTATGATGCAGACAGATCAGGAATTTCAACAAAGCAACCTTGA
Protein sequenceShow/hide protein sequence
MEFCVYEEFNEVEGERVFIVLYRFNRNGREVIVVPQRMTEVGQNLTTKDFANHTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVN
RSISRAQKALAYDADRSGISTKQP