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ClCG05G015090 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G015090
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGag-pol polyprotein
Genome locationCG_Chr05:26533274..26533534
RNA-Seq ExpressionClCG05G015090
SyntenyClCG05G015090
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042878.1 uncharacterized protein E6C27_scaffold44G003930 [Cucumis melo var. makuwa]3.1e-0849.28Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTSP-SDI
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D  + A    ++  +S   S  SDI
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTSP-SDI

KAA0050476.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.1e-0845.57Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNV---TSPSDIKTPVVLEK
        + FRCRECEGFGHYQ +CP +LKRQ K Y  TLSD+D + + D D  + A    ++  +S V    S +D    + LEK
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNV---TSPSDIKTPVVLEK

KAA0060068.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.4e-0852.63Show/hide
Query:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS
        D+  +CRECEG+G YQ +CPNFL+RQ K ++VTLSDDD    ++SDEE      ++S
Subjt:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS

TYK01623.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-0845.12Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDE------EIRALMRYLSPKDSNVTSPSDIKTPVVLEK
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TL+D+D    SD DE         A +  ++ +D N  S +D    + LEK
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDE------EIRALMRYLSPKDSNVTSPSDIKTPVVLEK

TYK29877.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.4e-0852.63Show/hide
Query:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS
        D+  +CRECEG+G YQ +CPNFL+RQ K ++VTLSDDD    ++SDEE      ++S
Subjt:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS

TrEMBL top hitse value%identityAlignment
A0A5A7TJA6 Uncharacterized protein1.5e-0849.28Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTSP-SDI
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D  + A    ++  +S   S  SDI
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTSP-SDI

A0A5A7UXV8 Gag-pol polyprotein1.1e-0852.63Show/hide
Query:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS
        D+  +CRECEG+G YQ +CPNFL+RQ K ++VTLSDDD    ++SDEE      ++S
Subjt:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS

A0A5A7V0X1 Gag-pol polyprotein1.5e-0850Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTS
        + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A    ++  +S   S
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTS

A0A5D3BPJ2 Gag-pol polyprotein5.1e-0945.12Show/hide
Query:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDE------EIRALMRYLSPKDSNVTSPSDIKTPVVLEK
        + FRCRECEGFGHYQA+CP +L+RQ K Y  TL+D+D    SD DE         A +  ++ +D N  S +D    + LEK
Subjt:  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDE------EIRALMRYLSPKDSNVTSPSDIKTPVVLEK

A0A5D3E1A2 Gag-pol polyprotein1.1e-0852.63Show/hide
Query:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS
        D+  +CRECEG+G YQ +CPNFL+RQ K ++VTLSDDD    ++SDEE      ++S
Subjt:  DKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGG
TTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATACTTATCTCCTAAGGATTCCAACGTGACATCTC
CTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGG
TTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATACTTATCTCCTAAGGATTCCAACGTGACATCTC
CTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA
Protein sequenceShow/hide protein sequence
MVSSQGSRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTSPSDIKTPVVLEKT