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ClCG05G015510 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G015510
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationCG_Chr05:27334456..27336925
RNA-Seq ExpressionClCG05G015510
SyntenyClCG05G015510
Gene Ontology termsGO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-1354.26Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFF-------VLLIVNKFCHDNYRVFIFYSNHFLIQDKAT
        SG N +MTN+L N+NL+N+YN EETVTV NGQPLNI   GS  LST        K          LL V+KFC DN  VF+FY++ FLIQDK T
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFF-------VLLIVNKFCHDNYRVFIFYSNHFLIQDKAT

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]8.4e-1233.15Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTH----------CIPLIYLKFFVLLIVNKFCHDNYRVFIFYSNHFLIQDKATDRP
        +G   ++T DL N+N   +Y  ++ +T+ NGQ L+I+ +G   +  +          C+P +      LL V++FC DN+  FIF S  F IQDKAT + 
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTH----------CIPLIYLKFFVLLIVNKFCHDNYRVFIFYSNHFLIQDKATDRP

Query:  FYTRKSINGLYPIPTIP----SAPS-----------------SQLHPKNYS------FSAKQ-ECFLWHQRLGYPLQKVLR
         +   S +GLYP+PT      SAPS                 S L   NYS      +  KQ    LWH RLG+P    L+
Subjt:  FYTRKSINGLYPIPTIP----SAPS-----------------SQLHPKNYS------FSAKQ-ECFLWHQRLGYPLQKVLR

KAB2617916.1 hypothetical protein D8674_013785 [Pyrus ussuriensis x Pyrus communis]1.4e-1135.95Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIP-----LIYLKFFV--LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFYT
        SG   +MT D  N+ LA  Y + ETV   NG+ L ++  G  IL  H  P     ++Y+      LL V + C DN    IF + +F IQDKAT+R  + 
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIP-----LIYLKFFV--LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFYT

Query:  RKSINGLYPIPTI----PSAPSSQLHPKNYSFSAKQECFLWHQRLGYPLQKVL
            NGLYPIP++    P++  S L PK +         +WH RLG+P   ++
Subjt:  RKSINGLYPIPTI----PSAPSSQLHPKNYSFSAKQECFLWHQRLGYPLQKVL

RWR76373.1 putative polyprotein [Cinnamomum micranthum f. kanehirae]3.2e-1132.9Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTH----------CIPLIYLKFFVLLIVNKFCHDNYRVFIFYSNHFLIQDKATDRP
        +G   ++T+++ N++L +DY+  + V+V NG  L+I+  GS+ +ST           C+P I      L+ V++F +DN   FIF S+ F I+DKA+ + 
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTH----------CIPLIYLKFFVLLIVNKFCHDNYRVFIFYSNHFLIQDKATDRP

Query:  FYTRKSINGLYPIPTIPSAPSSQLHPKNYSFSAKQ-ECFLWHQRLGYPLQKVLRH
         +  +S NGLYP P I   P+   +  + +F  ++    +WH RLG+P   V +H
Subjt:  FYTRKSINGLYPIPTIPSAPSSQLHPKNYSFSAKQ-ECFLWHQRLGYPLQKVLRH

XP_022158189.1 uncharacterized protein LOC111024722 [Momordica charantia]2.6e-2949.37Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDIL--STHCIPLIYLKFFV-----LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFYT
        SGCNA++TNDL N+NL + YN EE VTV NGQ LNI+  GS IL  S+H   +  +         LL V+KFC DN+ +F++ S+ FLIQDK TD   Y 
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDIL--STHCIPLIYLKFFV-----LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFYT

Query:  RKSINGLYPIPTIP--SAPSSQLHPKNYSFSAKQECFLWHQRLGYPLQKVLRHSFVGF
         KS+NGLYPIP+    S+  ++LHPKN +  AK   +LWH RLG+   K+LRH+   F
Subjt:  RKSINGLYPIPTIP--SAPSSQLHPKNYSFSAKQECFLWHQRLGYPLQKVLRHSFVGF

TrEMBL top hitse value%identityAlignment
A0A2N9EZ90 Uncharacterized protein6.9e-1237.04Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFFV--------LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFY
        +G   + T DL N+  ++ YN  + V+V NGQ L I+  G+  L T    L  L+  +        LL VNKFC DN+  F F S+ F IQD+ + +P Y
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFFV--------LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFY

Query:  TRKSINGLYPIP--TIPSAPSSQLHPKNYSFSAKQECF--------LWHQRLGYPLQKVLRH
           S +GLYP+   ++P   SSQ    + S SA+  C         LWH R G+P  +VLRH
Subjt:  TRKSINGLYPIP--TIPSAPSSQLHPKNYSFSAKQECF--------LWHQRLGYPLQKVLRH

A0A2N9F5X0 Uncharacterized protein4.1e-1239.07Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFFV--------LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFY
        +G   ++T +L N+  A  Y   E V+V NGQ + I   G+  LST       LK  +        LL V   C DN     F SN FLIQD  + +  Y
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFFV--------LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFY

Query:  TRKSINGLYPIPTIPSAPSSQLHPKNYSF-SAKQECFLWHQRLGYPLQKVL
           S NGLYPI T+PS+PS    P   +F S+K +  LWH RLG+P  +VL
Subjt:  TRKSINGLYPIPTIPSAPSSQLHPKNYSF-SAKQECFLWHQRLGYPLQKVL

A0A5A7VGG0 Retrotransposon protein1.3e-1354.26Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFF-------VLLIVNKFCHDNYRVFIFYSNHFLIQDKAT
        SG N +MTN+L N+NL+N+YN EETVTV NGQPLNI   GS  LST        K          LL V+KFC DN  VF+FY++ FLIQDK T
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFF-------VLLIVNKFCHDNYRVFIFYSNHFLIQDKAT

A0A5J5A1U7 Integrase catalytic domain-containing protein4.1e-1233.15Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTH----------CIPLIYLKFFVLLIVNKFCHDNYRVFIFYSNHFLIQDKATDRP
        +G   ++T DL N+N   +Y  ++ +T+ NGQ L+I+ +G   +  +          C+P +      LL V++FC DN+  FIF S  F IQDKAT + 
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTH----------CIPLIYLKFFVLLIVNKFCHDNYRVFIFYSNHFLIQDKATDRP

Query:  FYTRKSINGLYPIPTIP----SAPS-----------------SQLHPKNYS------FSAKQ-ECFLWHQRLGYPLQKVLR
         +   S +GLYP+PT      SAPS                 S L   NYS      +  KQ    LWH RLG+P    L+
Subjt:  FYTRKSINGLYPIPTIP----SAPS-----------------SQLHPKNYS------FSAKQ-ECFLWHQRLGYPLQKVLR

A0A6J1DYN6 uncharacterized protein LOC1110247221.3e-2949.37Show/hide
Query:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDIL--STHCIPLIYLKFFV-----LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFYT
        SGCNA++TNDL N+NL + YN EE VTV NGQ LNI+  GS IL  S+H   +  +         LL V+KFC DN+ +F++ S+ FLIQDK TD   Y 
Subjt:  SGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDIL--STHCIPLIYLKFFV-----LLIVNKFCHDNYRVFIFYSNHFLIQDKATDRPFYT

Query:  RKSINGLYPIPTIP--SAPSSQLHPKNYSFSAKQECFLWHQRLGYPLQKVLRHSFVGF
         KS+NGLYPIP+    S+  ++LHPKN +  AK   +LWH RLG+   K+LRH+   F
Subjt:  RKSINGLYPIPTIP--SAPSSQLHPKNYSFSAKQECFLWHQRLGYPLQKVLRHSFVGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGAGTGCAACGACATGGAGGTTTGCGAGGGTTGTTGCTGTTTCTGAGGTGCGTGTTGTTGATACCAGCGTGTGTGCTGCTGCTGGGTTGAGTGGTTGCAATGC
CTATATGACAAATGACCTTATCAATATGAACCTAGCTAATGACTATAACAGTGAGGAAACGGTAACTGTTTGTAATGGCCAACCCCTTAATATTACTCAAAATGGCAGCG
ATATACTTTCCACCCATTGCATTCCTTTAATTTATCTAAAATTCTTTGTACTCCTAATTGTTAACAAATTTTGTCATGATAATTATCGTGTTTTTATATTTTACTCTAAC
CATTTCCTCATTCAAGATAAAGCCACCGATCGTCCTTTTTATACACGAAAAAGTATTAATGGTCTGTATCCCATTCCAACGATCCCTAGTGCCCCTTCGTCTCAATTACA
TCCAAAAAATTATAGTTTTTCAGCAAAGCAAGAATGTTTTTTATGGCATCAAAGGTTAGGGTATCCATTGCAAAAAGTATTACGTCATTCATTTGTTGGGTTTTATGTCC
TAAAACTCGTTGTTTGTAACTTTTGGAACTTATTCTCAATAAAGTTGTTATCGAGATTTATTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGAGTGCAACGACATGGAGGTTTGCGAGGGTTGTTGCTGTTTCTGAGGTGCGTGTTGTTGATACCAGCGTGTGTGCTGCTGCTGGGTTGAGTGGTTGCAATGC
CTATATGACAAATGACCTTATCAATATGAACCTAGCTAATGACTATAACAGTGAGGAAACGGTAACTGTTTGTAATGGCCAACCCCTTAATATTACTCAAAATGGCAGCG
ATATACTTTCCACCCATTGCATTCCTTTAATTTATCTAAAATTCTTTGTACTCCTAATTGTTAACAAATTTTGTCATGATAATTATCGTGTTTTTATATTTTACTCTAAC
CATTTCCTCATTCAAGATAAAGCCACCGATCGTCCTTTTTATACACGAAAAAGTATTAATGGTCTGTATCCCATTCCAACGATCCCTAGTGCCCCTTCGTCTCAATTACA
TCCAAAAAATTATAGTTTTTCAGCAAAGCAAGAATGTTTTTTATGGCATCAAAGGTTAGGGTATCCATTGCAAAAAGTATTACGTCATTCATTTGTTGGGTTTTATGTCC
TAAAACTCGTTGTTTGTAACTTTTGGAACTTATTCTCAATAAAGTTGTTATCGAGATTTATTCACTAA
Protein sequenceShow/hide protein sequence
MAESATTWRFARVVAVSEVRVVDTSVCAAAGLSGCNAYMTNDLINMNLANDYNSEETVTVCNGQPLNITQNGSDILSTHCIPLIYLKFFVLLIVNKFCHDNYRVFIFYSN
HFLIQDKATDRPFYTRKSINGLYPIPTIPSAPSSQLHPKNYSFSAKQECFLWHQRLGYPLQKVLRHSFVGFYVLKLVVCNFWNLFSIKLLSRFIH