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ClCG05G015590 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G015590
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCG_Chr05:27462278..27462993
RNA-Seq ExpressionClCG05G015590
SyntenyClCG05G015590
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007642 - RNA polymerase Rpb2, domain 2
IPR037034 - RNA polymerase Rpb2, domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QKD77867.1 RNA polymerase beta subunit [Dalbergia yunnanensis]5.4e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
QZJ46746.1 RNA polymerase beta subunit [Dalbergia nigra]5.4e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
YP_009863565.1 RNA polymerase beta subunit [Dalbergia yunnanensis]5.4e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
YP_009865536.1 RNA polymerase beta subunit [Dalbergia frutescens]5.4e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
YP_009865704.1 RNA polymerase beta subunit [Dalbergia cearensis]5.4e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
TrEMBL top hitse value%identityAlignment
A0A0A0M3D4 RNA_pol_Rpb2_2 domain-containing protein5.3e-1877.78Show/hide
Query:  FVPPASACYSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        F P   + Y +F  +   PVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
Subjt:  FVPPASACYSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
A0A291PWD5 DNA-directed RNA polymerase subunit beta2.6e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
A0A6B9PIN2 DNA-directed RNA polymerase subunit beta2.6e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
A0A6M8AXT9 DNA-directed RNA polymerase subunit beta2.6e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
A0A6M8B5F9 DNA-directed RNA polymerase subunit beta2.6e-1781.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F ++   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
SwissProt top hitse value%identityAlignment
A6MM28 DNA-directed RNA polymerase subunit beta7.8e-1980Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F  +   PVFSESLCKELQKKFFQQRCELGRIGRRN+N+RLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
A9L988 DNA-directed RNA polymerase subunit beta4.6e-1981.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F  +   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
Q4VZP1 DNA-directed RNA polymerase subunit beta9.2e-2085.45Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F  +   PVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
Q6EW56 DNA-directed RNA polymerase subunit beta4.6e-1981.82Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F  +   PVFSESLCKELQKKFFQQRCELGRIGRRN+NQRLNLDIP NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
Q8S8X9 DNA-directed RNA polymerase subunit beta6.0e-1980Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F  +   PVFSESLCKELQKKFFQQRCELGRIGRRN+N+RLNLDIP+NNTFL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta1.5e-1772.73Show/hide
Query:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL
        Y +F  +   P+FSESLCKELQKKFF QRCELGRIGRRN+N RLNL+IP+NN FL
Subjt:  YSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTGTTCCTCCTGCGTCTGCTTGCTACTCCCGCTTTCTCTTCCTTGATCGTAGTCCGGTATTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCA
ACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGACTGAATCTTGATATACCTGAGAACAATACATTTTTATCATTTGATTGGACTGAAATTTTGA
ATGGGTACACTGAACGAGGACCTACAGGAAGAAGTTTACATGAGTCAACTGGAGTGGAAGCCAAACGACGGGGCCGAGAATCAGTGATCGATCCGAAGAACCCCTCAGCC
TCAGCGAAGATACCTGAGGAGGCGAGTGAGCGATCAAGCGGAAAAGGACTAAGAAAAGCAGGCAAAAGGCTAGAAGATCAACTGAGAGAGAAGGCACGGGCGATGGGCCC
CATACATCAGAATGCAAAAGGGCGGAGAGAATTGAAACAAGAAGAAGATTGGAATTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTTGTTCCTCCTGCGTCTGCTTGCTACTCCCGCTTTCTCTTCCTTGATCGTAGTCCGGTATTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCA
ACAAAGATGTGAATTAGGAAGGATTGGTCGACGAAATCTGAACCAGAGACTGAATCTTGATATACCTGAGAACAATACATTTTTATCATTTGATTGGACTGAAATTTTGA
ATGGGTACACTGAACGAGGACCTACAGGAAGAAGTTTACATGAGTCAACTGGAGTGGAAGCCAAACGACGGGGCCGAGAATCAGTGATCGATCCGAAGAACCCCTCAGCC
TCAGCGAAGATACCTGAGGAGGCGAGTGAGCGATCAAGCGGAAAAGGACTAAGAAAAGCAGGCAAAAGGCTAGAAGATCAACTGAGAGAGAAGGCACGGGCGATGGGCCC
CATACATCAGAATGCAAAAGGGCGGAGAGAATTGAAACAAGAAGAAGATTGGAATTGGTAG
Protein sequenceShow/hide protein sequence
MRFVPPASACYSRFLFLDRSPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLDIPENNTFLSFDWTEILNGYTERGPTGRSLHESTGVEAKRRGRESVIDPKNPSA
SAKIPEEASERSSGKGLRKAGKRLEDQLREKARAMGPIHQNAKGRRELKQEEDWNW