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ClCG05G015610 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G015610
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCCHC-type domain-containing protein
Genome locationCG_Chr05:27481146..27481367
RNA-Seq ExpressionClCG05G015610
SyntenyClCG05G015610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050194.1 polyprotein [Cucumis melo var. makuwa]9.3e-0647.06Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ E SS S +  +  +AIPC+GCI VLT  QE LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

KAA0052119.1 hypothetical protein E6C27_scaffold578G001110 [Cucumis melo var. makuwa]7.9e-0544.12Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ EE S S +  + ++ IPC+GCI VLT  Q+ LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

KAE8653133.1 hypothetical protein Csa_023937, partial [Cucumis sativus]7.9e-0546.15Show/hide
Query:  INEIRDE--STYEESSRSCSVCEEDDAIPCTG-C---IKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLEGQTSR
        IN +++E  S+ EE        +++ AIPCTG C   I V+TKDQE L DLIE+IP+   ++T L KLR ++E QT R
Subjt:  INEIRDE--STYEESSRSCSVCEEDDAIPCTG-C---IKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLEGQTSR

TYJ98078.1 polyprotein [Cucumis melo var. makuwa]7.9e-0544.12Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ EE S S +  + ++ IPC+GCI VLT  Q+ LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

TYJ98215.1 polyprotein [Cucumis melo var. makuwa]9.3e-0647.06Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ E SS S +  +  +AIPC+GCI VLT  QE LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

TrEMBL top hitse value%identityAlignment
A0A0A0LWY2 CCHC-type domain-containing protein5.0e-0544.87Show/hide
Query:  INEIRDE--STYEESSRSCSVCEEDDAIPCT----GCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLEGQTSR
        IN +++E  S+ EE        +++ AIPCT    G I V+TKDQE L DLIE+IP+   ++T L KLR ++E QT R
Subjt:  INEIRDE--STYEESSRSCSVCEEDDAIPCT----GCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLEGQTSR

A0A5A7U4M8 Polyprotein4.5e-0647.06Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ E SS S +  +  +AIPC+GCI VLT  QE LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

A0A5A7UF66 Uncharacterized protein3.8e-0544.12Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ EE S S +  + ++ IPC+GCI VLT  Q+ LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

A0A5D3BI97 Polyprotein4.5e-0647.06Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ E SS S +  +  +AIPC+GCI VLT  QE LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

A0A5D3BIR4 Polyprotein3.8e-0544.12Show/hide
Query:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE
        ++N + +ES+ EE S S +  + ++ IPC+GCI VLT  Q+ LLD+IEE+ +  +RK +L +LR+ LE
Subjt:  MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAATGAGATAAGAGATGAATCAACATATGAAGAATCTTCTAGATCATGCAGCGTCTGTGAAGAGGATGATGCAATTCCTTGCACAGGATGCATCAAAGTTCTTAC
AAAAGATCAAGAGCATCTACTTGATCTAATAGAAGAAATTCCAAACGCTCAGTTAAGGAAGACAGTTCTTACAAAGCTAAGAGATACTTTGGAAGGACAAACTTCAAGAT
AA
mRNA sequenceShow/hide mRNA sequence
ATGATCAATGAGATAAGAGATGAATCAACATATGAAGAATCTTCTAGATCATGCAGCGTCTGTGAAGAGGATGATGCAATTCCTTGCACAGGATGCATCAAAGTTCTTAC
AAAAGATCAAGAGCATCTACTTGATCTAATAGAAGAAATTCCAAACGCTCAGTTAAGGAAGACAGTTCTTACAAAGCTAAGAGATACTTTGGAAGGACAAACTTCAAGAT
AA
Protein sequenceShow/hide protein sequence
MINEIRDESTYEESSRSCSVCEEDDAIPCTGCIKVLTKDQEHLLDLIEEIPNAQLRKTVLTKLRDTLEGQTSR