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ClCG05G015665 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G015665
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRibonuclease H
Genome locationCG_Chr05:27526753..27527106
RNA-Seq ExpressionClCG05G015665
SyntenyClCG05G015665
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033845.1 uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa]7.9e-3971.79Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEKS    RIAKWQVLL EYDI+YVTRK +KGSAIVDCLA  P+EDYE MK EF DED+M +S  +  QD E W M FDGATNEVGHGVGAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
           DGK YPL  KLYFD
Subjt:  IFPDGKLYPLIAKLYFD

XP_016899404.1 PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo]2.4e-4376.92Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK   S RIAKWQVL SEYDI+YVTR V+KGSAI DCLA LP+EDYELMKFEF DED+MT+S  +  QD E W M FDGATNEVGHGVGAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
         FPDGK YPL AKLYFD
Subjt:  IFPDGKLYPLIAKLYFD

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]2.4e-3565.81Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK   S  IA+WQVLLSEYDIVYVT+K IKGSA+ D LA  PI DY  +KF+F DE I TI+    + DP+TW M+FDGA+NE+GHG+GAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
        I P G+LYPLIA+L FD
Subjt:  IFPDGKLYPLIAKLYFD

XP_022158764.1 uncharacterized protein LOC111025231 [Momordica charantia]1.8e-3565.81Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK     RIA+WQVLLSEYDIVYVTRK IKG A+ D LA  PI DY  +KF+F DE I TI+T   + DP+TW M+FDGA+NE+GHG+GAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
        I P G+LYPL A+L FD
Subjt:  IFPDGKLYPLIAKLYFD

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.4e-3565.81Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK   S RIA+WQVLLSEYDIVYVTRK IKGSA+ D LA  PI DY  +KF+F DE I TI+    + DP+TW M+FDGA+NE+GHG+G I 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
        I P G+LYPL A+L FD
Subjt:  IFPDGKLYPLIAKLYFD

TrEMBL top hitse value%identityAlignment
A0A1S4DTT9 uncharacterized protein LOC1079905051.1e-4376.92Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK   S RIAKWQVL SEYDI+YVTR V+KGSAI DCLA LP+EDYELMKFEF DED+MT+S  +  QD E W M FDGATNEVGHGVGAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
         FPDGK YPL AKLYFD
Subjt:  IFPDGKLYPLIAKLYFD

A0A5A7UKV4 Retrovirus-related Pol polyprotein from transposon 17.61.1e-4376.92Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK   S RIAKWQVL SEYDI+YVTR V+KGSAI DCLA LP+EDYELMKFEF DED+MT+S  +  QD E W M FDGATNEVGHGVGAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
         FPDGK YPL AKLYFD
Subjt:  IFPDGKLYPLIAKLYFD

A0A5D3BPI8 RNase H domain-containing protein3.8e-3971.79Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEKS    RIAKWQVLL EYDI+YVTRK +KGSAIVDCLA  P+EDYE MK EF DED+M +S  +  QD E W M FDGATNEVGHGVGAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
           DGK YPL  KLYFD
Subjt:  IFPDGKLYPLIAKLYFD

A0A6J1E0D0 uncharacterized protein LOC1110252318.8e-3665.81Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK     RIA+WQVLLSEYDIVYVTRK IKG A+ D LA  PI DY  +KF+F DE I TI+T   + DP+TW M+FDGA+NE+GHG+GAI 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
        I P G+LYPL A+L FD
Subjt:  IFPDGKLYPLIAKLYFD

A0A6J1E2J7 Ribonuclease H6.7e-3665.81Show/hide
Query:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF
        MDPIKYIFEK   S RIA+WQVLLSEYDIVYVTRK IKGSA+ D LA  PI DY  +KF+F DE I TI+    + DP+TW M+FDGA+NE+GHG+G I 
Subjt:  MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIF

Query:  IFPDGKLYPLIAKLYFD
        I P G+LYPL A+L FD
Subjt:  IFPDGKLYPLIAKLYFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTATAAAGTACATTTTTGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTGCTATCGGAGTACGATATTGTCTATGTCACCAGAAAGGTCAT
AAAAGGGAGTGCAATCGTCGATTGTCTAGCTGCATTGCCTATTGAAGACTATGAGCTAATGAAATTTGAATTTTCAGATGAAGACATCATGACGATATCCACATTGAATG
TGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGGAGCCACGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTA
ATTGCTAAGTTATACTTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTATAAAGTACATTTTTGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTGCTATCGGAGTACGATATTGTCTATGTCACCAGAAAGGTCAT
AAAAGGGAGTGCAATCGTCGATTGTCTAGCTGCATTGCCTATTGAAGACTATGAGCTAATGAAATTTGAATTTTCAGATGAAGACATCATGACGATATCCACATTGAATG
TGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGGAGCCACGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTA
ATTGCTAAGTTATACTTTGATTGA
Protein sequenceShow/hide protein sequence
MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPL
IAKLYFD