| GenBank top hits | e value | %identity | Alignment |
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| XP_016901950.1 PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo] | 5.7e-16 | 36.41 | Show/hide |
Query: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
M+++ K S + D +N+A D++RF+GDVGETD+ LE ILPHCTVDQLMH+EKSS+G + G E ++ ++ R KR
Subjt: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
Query: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
++K+Q +K + + QIC +VP SS+K+ + K+KILKKAK E LQS E+KN A++RNA+ K
Subjt: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima] | 1.5e-16 | 35.71 | Show/hide |
Query: INEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFE-----------------
+N+A DS+RF+GDVG+TDL FLE ILPHCTVDQLMHIE SKG + G +D++ + + K + ++
Subjt: INEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFE-----------------
Query: -------CNTTK----------------SKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
C K SK+ KK T++C+V S+++ KRS+ SKILKKA++E LQSIE KN +AF+RNA+ K
Subjt: -------CNTTK----------------SKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida] | 6.1e-26 | 40.09 | Show/hide |
Query: QIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKG-------------------------------------------
++ K SS + INEA DS+RF+GDVG+TDL LE ILPHCTVDQLMHIE SSKG
Subjt: QIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKG-------------------------------------------
Query: --------------------------------HQIIFCGDEDLSSSNKKPRSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHND
+IIFC D SS+NKK RS+ TI ECNTT+SK+ KK N E Q+C+V S K H
Subjt: --------------------------------HQIIFCGDEDLSSSNKKPRSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHND
Query: NKSKILKKAKREALQSIEIKNFVAFQRNAMHK
+SKILKKAKREALQ IE KN +AF+RNAM K
Subjt: NKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida] | 7.4e-24 | 38.36 | Show/hide |
Query: QIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKG-------------------------------------------
++ K SS + INEA D++RF+ DVG+TDL L+ ILPHCTVDQL+HIE SSKG
Subjt: QIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKG-------------------------------------------
Query: --------------------------------HQIIFCGDEDLSSSNKKPRSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHND
+IIFC D SS+NKK RS+ TI ECNTT+SK+ KK N E Q+C+V S K H
Subjt: --------------------------------HQIIFCGDEDLSSSNKKPRSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHND
Query: NKSKILKKAKREALQSIEIKNFVAFQRNAMHK
+SKILKKAKREALQ IE KN +AF+RNAM K
Subjt: NKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| XP_038900478.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida] | 5.7e-16 | 36.92 | Show/hide |
Query: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTI----
M+++ K S + D +N+A D++RF+GDVGETD+ L+ ILPHCTVDQLMH+EKSS+G + G E ++ ++ R KR
Subjt: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTI----
Query: --------GFECNTTKS----------KLQKKTNSETQICEVPSSSDKKRSFERAIRSRHNDN-KSKILKKAKREALQSIEIKNFVAFQRNAMHK
E N +K+ + +K + + QIC S KRSF ++ + N K+KILKKAK E LQS E+KN A++RNA+ K
Subjt: --------GFECNTTKS----------KLQKKTNSETQICEVPSSSDKKRSFERAIRSRHNDN-KSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0KJR8 Nudix hydrolase domain-containing protein | 2.3e-15 | 34.04 | Show/hide |
Query: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKG-----------------------------------------
M ++ K I LN+D +N+A DSV+F+GDVG+TDL+ LE IL HCT DQL+HIE SKG
Subjt: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKG-----------------------------------------
Query: -----------------------------HQIIFCGDEDLSSSNKKPRSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFE
QI+FCG ED SNK P+S RT+GF+ NTTKS KK E + +V +SS+K+ + E
Subjt: -----------------------------HQIIFCGDEDLSSSNKKPRSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFE
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| A0A1S3C4D6 transcription elongation factor B polypeptide 3 isoform X1 | 2.8e-16 | 36.41 | Show/hide |
Query: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
M+++ K S + D +N+A D++RF+GDVGETD+ LE ILPHCTVDQLMH+EKSS+G + G E ++ ++ R KR
Subjt: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
Query: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
++K+Q +K + + QIC +VP SS+K+ + K+KILKKAK E LQS E+KN A++RNA+ K
Subjt: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| A0A1S4E1U0 transcription elongation factor B polypeptide 3 isoform X2 | 2.8e-16 | 36.41 | Show/hide |
Query: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
M+++ K S + D +N+A D++RF+GDVGETD+ LE ILPHCTVDQLMH+EKSS+G + G E ++ ++ R KR
Subjt: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
Query: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
++K+Q +K + + QIC +VP SS+K+ + K+KILKKAK E LQS E+KN A++RNA+ K
Subjt: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X2 | 2.8e-16 | 36.41 | Show/hide |
Query: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
M+++ K S + D +N+A D++RF+GDVGETD+ LE ILPHCTVDQLMH+EKSS+G + G E ++ ++ R KR
Subjt: MFQIGKAISSLNNDAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFEC
Query: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
++K+Q +K + + QIC +VP SS+K+ + K+KILKKAK E LQS E+KN A++RNA+ K
Subjt: NTTKSKLQ----------------------KKTNSETQIC-EVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| A0A6J1IR58 uncharacterized protein LOC111479252 | 7.3e-17 | 35.71 | Show/hide |
Query: INEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFE-----------------
+N+A DS+RF+GDVG+TDL FLE ILPHCTVDQLMHIE SKG + G +D++ + + K + ++
Subjt: INEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSSKGHQII-------------FCGDEDLSSSNKKPRSKRTIGFE-----------------
Query: -------CNTTK----------------SKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
C K SK+ KK T++C+V S+++ KRS+ SKILKKA++E LQSIE KN +AF+RNA+ K
Subjt: -------CNTTK----------------SKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHNDNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | 4.2e-09 | 30.43 | Show/hide |
Query: DAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSS-------------KGHQIIFCGDEDLSSS------NK-----------------KP
D + +A D+V++IG VG D Q LE IL HCT++QL HIE ++ KG G+ED+ NK +
Subjt: DAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSS-------------KGHQIIFCGDEDLSSS------NK-----------------KP
Query: RSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHN--DNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
+ K G K + ++K + +T++C + KR F S +N KS I+KKAK + L+S E+KN A +RN + K
Subjt: RSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHN--DNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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| AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). | 4.2e-09 | 30.43 | Show/hide |
Query: DAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSS-------------KGHQIIFCGDEDLSSS------NK-----------------KP
D + +A D+V++IG VG D Q LE IL HCT++QL HIE ++ KG G+ED+ NK +
Subjt: DAWINEARDSVRFIGDVGETDLQFLELILPHCTVDQLMHIEKSS-------------KGHQIIFCGDEDLSSS------NK-----------------KP
Query: RSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHN--DNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
+ K G K + ++K + +T++C + KR F S +N KS I+KKAK + L+S E+KN A +RN + K
Subjt: RSKRTIGFECNTTKSKLQKKTNSETQICEVPSSSDKKRSFERAIRSRHN--DNKSKILKKAKREALQSIEIKNFVAFQRNAMHK
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