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ClCG05G016540 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G016540
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description60S ribosomal protein L39
Genome locationCG_Chr05:28762771..28764289
RNA-Seq ExpressionClCG05G016540
SyntenyClCG05G016540
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9662083.1 hypothetical protein SADUNF_Sadunf18G0016500 [Salix dunnii]4.0e-2273.08Show/hide
Query:  KCFSLLIGFFFVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        KC      +F +   A+  A Y++ +KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  KCFSLLIGFFFVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2278.67Show/hide
Query:  SLLIGFFFVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SL +GF  V           R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SLLIGFFFVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-3290.24Show/hide
Query:  SGAYKCFSLLIGFFFVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        S AYK  SLLIGFF +PPSASKLA   RNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SGAYKCFSLLIGFFFVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

PON37200.1 Ribosomal protein [Trema orientale]9.0e-2285.07Show/hide
Query:  VPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        VPPS ++     R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]9.0e-2293.33Show/hide
Query:  LAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LA   R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hitse value%identityAlignment
A0A0A0LM35 Uncharacterized protein9.7e-2298.18Show/hide
Query:  RNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5AKY6 Ribosomal protein4.3e-2285.07Show/hide
Query:  VPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        VPPS ++     R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5ANB0 Ribosomal protein4.3e-2285.07Show/hide
Query:  VPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        VPPS ++     R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A3P6CHA1 Uncharacterized protein (Fragment)1.6e-2182.35Show/hide
Query:  FVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F+  SA      RR SKMPSHK+F IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC1114629684.3e-2293.33Show/hide
Query:  LAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LA   R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-12.1e-2194.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L394.2e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-24.2e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-31.2e-2194.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-14.2e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein9.9e-1997.67Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein4.7e-2190.2Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein1.5e-2294.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGATAAAATAGCATTTGATAGGAGATCTGGAGCGTATAAATGTTTTTCGCTACTGATAGGGTTTTTCTTTGTCCCGCCGTCTGCTTCCAAGCTCGCCGTCTATCG
CCGGAACTCGAAAATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTGAGAACCGACA
ACACGATCAGATACAACGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGATAAAATAGCATTTGATAGGAGATCTGGAGCGTATAAATGTTTTTCGCTACTGATAGGGTTTTTCTTTGTCCCGCCGTCTGCTTCCAAGCTCGCCGTCTATCG
CCGGAACTCGAAAATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTGAGAACCGACA
ACACGATCAGATACAACGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA
Protein sequenceShow/hide protein sequence
MCDKIAFDRRSGAYKCFSLLIGFFFVPPSASKLAVYRRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF