CuGenDBv2

Gene ID	ClCG05G016610
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA ligase
Genome location	CG_Chr05:28869303..28872305
RNA-Seq Expression	ClCG05G016610
Synteny	ClCG05G016610
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.4e-44

86.11

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASPP
        SRLPASPP
Subjt:  SRLPASPP

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]

9.4e-39

80.37

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFTHKLKSSI CFR DHGDL + ED++S  +PRSPLKS ASE  ELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASP
        SRLPASP
Subjt:  SRLPASP

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]

7.4e-44

86.11

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASPP
        SRLPASPP
Subjt:  SRLPASPP

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]

3.3e-44

85.19

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFT KLKSSIRCFR DH D  E+EDDSSP TPRSPLKSMA+E PE+R MCRNLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASPP
        SRLPASPP
Subjt:  SRLPASPP

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]

1.1e-44

87.04

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFT KLKSSI CFR DHGD  E EDDSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASPP
        SRLPASPP
Subjt:  SRLPASPP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4E2 Uncharacterized protein

3.0e-35

77.98

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDF
        PFSFTHKLKS I CFRPDH D +  ++ SSPT+P   LKSM S+LPELR MCR+LVAR S  SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDF

Query:  TSRLPASPP
        TSRLPASPP
Subjt:  TSRLPASPP

A0A5A7VBS3 DNA ligase

6.8e-35

77.48

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Query:  PFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIR
        PFSFTHKLKSSI  CFRPDH  +L E EDD+        LKSM S+LPELR MCR+LVAR S  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD+EFPIR
Subjt:  PFSFTHKLKSSI-RCFRPDH-GDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIR

Query:  DFTSRLPASPP
        DFTSRLPASPP
Subjt:  DFTSRLPASPP

A0A6J1CC83 uncharacterized protein LOC111009386

4.5e-39

80.37

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFTHKLKSSI CFR DHGDL + ED++S  +PRSPLKS ASE  ELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASP
        SRLPASP
Subjt:  SRLPASP

A0A6J1FP70 uncharacterized protein LOC111446022

3.6e-44

86.11

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFT KLKSSI CFR DHGD  E E DSSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASPP
        SRLPASPP
Subjt:  SRLPASPP

A0A6J1J1H3 uncharacterized protein LOC111480417

1.6e-44

85.19

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Query:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT
        PFSFT KLKSSIRCFR DH D  E+EDDSSP TPRSPLKSMA+E PE+R MCRNLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDEFPIRDF 
Subjt:  PFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFT

Query:  SRLPASPP
        SRLPASPP
Subjt:  SRLPASPP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G48020.1 unknown protein

3.6e-04

42.86

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Query:  RNLVARFSRSRRR---YHHSADFRYDPSSYALNFEDEQIRDDDEF---PIRDFTSRLPASPPA
        +  + RF+R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R  + P A
Subjt:  RNLVARFSRSRRR---YHHSADFRYDPSSYALNFEDEQIRDDDEF---PIRDFTSRLPASPPA

AT5G11070.1 unknown protein

4.4e-10

45.83

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Query:  TPRSP---LKSMASELPELREMCRNLVAR-----------FSRSRRRYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK
        TPRSP   LKS A EL ELR+ CR + +R           ++     +HHS     DF YDP SYALNFED  +R DD+    +FT+RLP SP  K
Subjt:  TPRSP---LKSMASELPELREMCRNLVAR-----------FSRSRRRYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK

AT5G35090.1 unknown protein

2.2e-09

37.31

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Query:  SFTHKLKSSI---RCFR-PDHGDLDETEDD--SSPTTPRSPLKS-----MASELPEL-------REMCRNLVARF--------SRSRRRYHHSADFRYDP
        S   KLKS      CFR  +H   D   DD  SSP T     +S     M ++ P L        E C++L+ R            +    H+ADF YDP
Subjt:  SFTHKLKSSI---RCFR-PDHGDLDETEDD--SSPTTPRSPLKS-----MASELPEL-------REMCRNLVARF--------SRSRRRYHHSADFRYDP

Query:  SSYALNFEDEQIRDD-DEFPIRDFTSRLPASPPA
        SSYALNF+     D+ D FP+R+F++RLP SPP+
Subjt:  SSYALNFEDEQIRDD-DEFPIRDFTSRLPASPPA

Sequences

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CDS sequence

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ATGATGTTGAACGAGTACAGTCCATTTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTC
TCCAACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTTGTCGCTCGGTTCAGCCGGAGTCGCCGACGTCCAT
TTTCATTCACTCACAAGCTCAAATCCTCAATCCGTTGTTTCCGCCCCGATCATGGCGATTTGGACGAAACCGAAGACGATTCTTCTCCAACAACTCCTAGATCGCCTCTC
AAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTTGTCGCTCGGTTCAGCCGGAGTCGCCGACGGTATCATCACTCCGCCGATTTCCGATACGA
TCCTTCTAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGATTTCACTTCGAGATTACCGGCGTCGCCGCCAGCGAAATGA

mRNA sequence

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Protein sequence

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MMLNEYSPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRPFSFTHKLKSSIRCFRPDHGDLDETEDDSSPTTPRSPL
KSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK

ClCG05G016610 (gene) of Watermelon (Charleston Gray) v2.5 genome