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ClCG05G017760 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G017760
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCG_Chr05:30140972..30141205
RNA-Seq ExpressionClCG05G017760
SyntenyClCG05G017760
Gene Ontology termsGO:0008299 - isoprenoid biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004496 - mevalonate kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044655.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-1050Show/hide
Query:  SGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        S F+  LP  K              +  M+TITL  V+   NRREGP+KR SDAKFQA+R +GLCFKCEE+Y  GH
Subjt:  SGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-0953.03Show/hide
Query:  KSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        K+T+     EG    +  M+TITL  V+T  NRREGP KR SDA+FQA+R +GLCF+C E+Y  GH
Subjt:  KSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

KAA0057854.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-1066.67Show/hide
Query:  MQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        M+T+TL GV+   NRREGP+KR +DA+FQA+R +GLCFKCEE+Y VGH
Subjt:  MQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

KAA0062185.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-0949.28Show/hide
Query:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+C+E+Y VGH
Subjt:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

TYK04845.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-0949.28Show/hide
Query:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+C+E+Y VGH
Subjt:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

TrEMBL top hitse value%identityAlignment
A0A5A7TTE3 Reverse transcriptase1.4e-1050Show/hide
Query:  SGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        S F+  LP  K              +  M+TITL  V+   NRREGP+KR SDAKFQA+R +GLCFKCEE+Y  GH
Subjt:  SGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

A0A5A7URT5 Ty3-gypsy retrotransposon protein4.2e-1066.67Show/hide
Query:  MQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        M+T+TL GV+   NRREGP+KR +DA+FQA+R +GLCFKCEE+Y VGH
Subjt:  MQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

A0A5A7V8F0 Retrotransposon protein2.1e-0949.28Show/hide
Query:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+C+E+Y VGH
Subjt:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

A0A5D3C0H5 Retrotransposon protein1.2e-0949.28Show/hide
Query:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+C+E+Y VGH
Subjt:  PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

A0A5D3CU05 Ty3/gypsy retrotransposon protein2.7e-0953.03Show/hide
Query:  KSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH
        K+T+     EG    +  M+TITL  V+T  NRREGP KR SDA+FQA+R +GLCF+C E+Y  GH
Subjt:  KSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGTTTCAAAATTCGGCTACCTGTTGTTAAATCGACACTAATGAATCCTCGAGGAGAAGGGCGGCAGCTAGATACTAATACAATGCAGACGATCACTTTGTGTGG
GGTGTCGACATTGGGAAATCGCCGAGAGGGACCAGCCAAGAGACGGTCAGATGCTAAATTTCAGGCCAAGCGAGGTAGAGGTCTATGCTTCAAATGTGAGGAGCAATATG
TTGTTGGCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGTTTCAAAATTCGGCTACCTGTTGTTAAATCGACACTAATGAATCCTCGAGGAGAAGGGCGGCAGCTAGATACTAATACAATGCAGACGATCACTTTGTGTGG
GGTGTCGACATTGGGAAATCGCCGAGAGGGACCAGCCAAGAGACGGTCAGATGCTAAATTTCAGGCCAAGCGAGGTAGAGGTCTATGCTTCAAATGTGAGGAGCAATATG
TTGTTGGCCATTGA
Protein sequenceShow/hide protein sequence
MSGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH