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ClCG05G018910 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G018910
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionProtein RADIALIS-like 3
Genome locationCG_Chr05:31209671..31210260
RNA-Seq ExpressionClCG05G018910
SyntenyClCG05G018910
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]2.0e-4396.84Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRN

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]1.0e-4296.81Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]6.9e-3693.1Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS RGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]1.9e-4190Show/hide
Query:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR
        MASSSVTS  RGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+  +FT+
Subjt:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]5.5e-3388.37Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG
        MASSS T+  GFYSSWTK+ENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein4.8e-4396.81Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A1S3CRN8 protein RADIALIS-like 44.8e-4396.81Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A5A7TE80 Protein RADIALIS-like 34.8e-4396.81Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A6J1DP29 protein RADIALIS-like 43.3e-3693.1Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS RGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

A0A6J1FCU5 protein RADIALIS-like 39.1e-4290Show/hide
Query:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR
        MASSSVTS  RGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+  +FT+
Subjt:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.5e-1753.12Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR

Q1G3C4 Protein RADIALIS-like 46.3e-1656.79Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

Q58FS3 Transcription factor RADIALIS4.8e-1648.94Show/hide
Query:  VTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR
        + STRG    W+ KENK FE ALA YD+DTPDR+  VARAV  G+T EE ++ YE+LV D++ IE+G+V  P Y+  G N +    + RN+  R
Subjt:  VTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTR

Q6NNN0 Protein RADIALIS-like 31.8e-1861.18Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN
        MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN

Q9SIJ5 Protein RADIALIS-like 22.6e-1759.55Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.5e-1752.69Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG  D
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD

AT1G75250.1 RAD-like 62.6e-1744.23Show/hide
Query:  TSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTSHFN
        +++R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R   D      T+ L    +
Subjt:  TSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTSHFN

Query:  ILYN
        I ++
Subjt:  ILYN

AT2G18328.1 RAD-like 44.5e-1756.79Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein1.8e-1859.55Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG

AT4G39250.1 RAD-like 11.1e-1853.12Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTGTCACGTCGACACGTGGCTTTTACTCATCCTGGACAAAAAAGGAAAACAAGAAATTTGAGGAAGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCTGAGGAAGCAAGAAGGCTCTATGAGCTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAG
TCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTACGCTGACCAGCAGAGAAATGTATTCACCAGACTACTAACTTCTCATTTCAACATTTTATACAAC
ATCGCACTTGGAACTTCAGTTTCCTTTGAAGTAGATCAAGCGAAGAATCTGAAAATTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAGCTCTGTCACGTCGACACGTGGCTTTTACTCATCCTGGACAAAAAAGGAAAACAAGAAATTTGAGGAAGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCTGAGGAAGCAAGAAGGCTCTATGAGCTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAG
TCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTACGCTGACCAGCAGAGAAATGTATTCACCAGACTACTAACTTCTCATTTCAACATTTTATACAAC
ATCGCACTTGGAACTTCAGTTTCCTTTGAAGTAGATCAAGCGAAGAATCTGAAAATTACCTGA
Protein sequenceShow/hide protein sequence
MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNVFTRLLTSHFNILYN
IALGTSVSFEVDQAKNLKIT