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ClCG05G018950 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G018950
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein RADIALIS-like 3
Genome locationCG_Chr05:31229761..31233107
RNA-Seq ExpressionClCG05G018950
SyntenyClCG05G018950
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]3.6e-3988.89Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRS PA RGF F+D+EQR+++
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]7.8e-4295.4Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]1.5e-3783.52Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+DEE+R+++
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]7.1e-3581.11Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE+GQVPFP Y +S PAG GF FVDEEQR+++
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]3.5e-4293.33Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCFVDEEQR+++
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein1.8e-3988.89Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRS PA RGF F+D+EQR+++
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

A0A1S3CPA0 protein RADIALIS-like 33.8e-4295.4Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

A0A5D3D7Z0 Protein RADIALIS-like 33.8e-4295.4Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQR

A0A6J1CC55 protein RADIALIS-like 37.4e-3883.52Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+DEE+R+++
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

A0A6J1FM85 protein RADIALIS-like 33.4e-3581.11Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE+GQVPFP Y +S PAG GF FVDEEQR+++
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.3e-2663.64Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+R++N
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN

Q1A173 Protein RADIALIS-like 65.8e-2474.24Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR

Q58FS3 Transcription factor RADIALIS2.0e-2469.44Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSG
        GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +G
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSG

Q6NNN0 Protein RADIALIS-like 32.0e-2465.75Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSG
        M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+ EEV+RHYE L+ DVN IE+G+ P PNYR +G
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSG

Q9SIJ5 Protein RADIALIS-like 22.6e-2461.11Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRLKN
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+R+++
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRLKN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.9e-2264.29Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR
        M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+ EEVKRHY+ LVED+  IE   VP P Y+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 64.1e-2574.24Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 64.1e-2574.24Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR

AT2G21650.1 Homeodomain-like superfamily protein1.9e-2561.11Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRLKN
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+R+++
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYR-RSGPAGRGFCFVDEEQRLKN

AT4G39250.1 RAD-like 18.9e-2863.64Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+R++N
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGT
CGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGAC
CTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGTCTAAAAAACACAAATGAAATCAATGCTAGGATTACGGATGAGGAGTCTACAATTGCACTGAAGTACGAA
TGTAGGAAGACAAAAGTTCTATCTTTCCATTAA
mRNA sequenceShow/hide mRNA sequence
AACCACTGATCTGAAATTGATAGTGTTATAGAGACGAGAAGTTGATATTGCGATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAG
CCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTC
AACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGTCTAAAAAACACAAATGA
AATCAATGCTAGGATTACGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACAAAAGTTCTATCTTTCCATTAACTATTTTCAACTAAAACTTTCAAGG
TCCAACCACCAAGTGTTAATGAAATATGAAGG
Protein sequenceShow/hide protein sequence
MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKNTNEINARITDEESTIALKYE
CRKTKVLSFH