CuGenDBv2

Gene ID	ClCG05G020280
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	F-box protein GID2-like
Genome location	CG_Chr05:32468104..32468649
RNA-Seq Expression	ClCG05G020280
Synteny	ClCG05G020280
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008452610.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

2.5e-84

87.5

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKRVVS  DG GDR MGKKP+A+T D    GGE  S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        SVVLALGGFRRLHSLFIWPLTKPQSS         SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_011654137.1 F-box protein GID2 [Cucumis sativus]

2.8e-83

86.46

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCV---GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRVV   DG GDR MGKKP+A+T D     GGE  S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCV---GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQ--------SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        RSVVLALGGFRRLHSLFIWPLTKPQ        SSSS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQ--------SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022937325.1 F-box protein GID2-like [Cucurbita moschata]

2.2e-80

87.29

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022977120.1 F-box protein GID2-like [Cucurbita maxima]

9.8e-81

86.89

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSAS--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS SSS+S+S  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSAS--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_038900230.1 F-box protein GID2 [Benincasa hispida]

2.4e-87

91.26

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV   DGDGDR  GKKPRA+T DC GG  PS +TGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQ---SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
        VLALGGFRRLHSLFIWPLTKPQ   SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Subjt:  VLALGGFRRLHSLFIWPLTKPQ---SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

1.3e-83

86.46

Show/hide

Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCV---GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRVV   DG GDR MGKKP+A+T D     GGE  S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCV---GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQ--------SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        RSVVLALGGFRRLHSLFIWPLTKPQ        SSSS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQ--------SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A1S3BV18 F-box protein GID2-like

1.2e-84

87.5

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKRVVS  DG GDR MGKKP+A+T D    GGE  S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        SVVLALGGFRRLHSLFIWPLTKPQSS         SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A5A7VFE5 F-box protein GID2-like

1.2e-84

87.5

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKRVVS  DG GDR MGKKP+A+T D    GGE  S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        SVVLALGGFRRLHSLFIWPLTKPQSS         SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1FA22 F-box protein GID2-like

1.1e-80

87.29

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1ILD7 F-box protein GID2-like

4.8e-81

86.89

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Query:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSAS--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS SSS+S+S  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSAS--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.4e-26

46.72

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Query:  NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASW-
        +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL                    W 
Subjt:  NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASW-

Query:  -SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM
         +  P   G + PP R G+D+V LSLSL SI +++ M
Subjt:  -SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

1.1e-10

29.63

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Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASW
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASW

Query:  SPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  SPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

7.4e-47

54.14

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Query:  MKRVVSDVD--GDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKR  +D D  GD      KK ++   +         + GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLR
Subjt:  MKRVVSDVD--GDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        SVVLALGGFRRLHSL++WPL+KP                            P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.7e-04

Show/hide

Query:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

5.2e-48

54.14

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Query:  MKRVVSDVD--GDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKR  +D D  GD      KK ++   +         + GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLR
Subjt:  MKRVVSDVD--GDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        SVVLALGGFRRLHSL++WPL+KP                            P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

7.9e-12

29.63

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Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASW
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASW

Query:  SPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  SPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGCGAGTTGTTTCAGATGTGGATGGGGATGGGGATCGGAACATGGGGAAGAAACCTAGGGCGGATACCCATGATTGTGTCGGAGGAGAACACCCCTCCCACAAGAC
TGGATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTCAAGCATGTGGATGCCAGAACTCTGGCCATGGCGGCGTGTGTGAGCAAGCAATGGCACAAAACCGCCG
AAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGGCACTGGGCCAACACCGGTTGCGGCAACCAACAGCTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTT
CACTCCCTCTTCATCTGGCCTCTTACCAAACCCCAATCCTCCTCCTCCACATCTTCGTCGGCCTCCTCTTCCTCGTCTGCGTCTTGGTCTCCGTTTCCGGCGATGATTGG
ATCGAAGCCGCCAGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

mRNA sequence

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Protein sequence

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MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRL
HSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

ClCG05G020280 (gene) of Watermelon (Charleston Gray) v2.5 genome