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ClCG05G020440 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G020440
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description40S ribosomal protein S29
Genome locationCG_Chr05:32558198..32560419
RNA-Seq ExpressionClCG05G020440
SyntenyClCG05G020440
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAU00845.1 hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis]4.4e-12100Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

BBH09677.1 Ribosomal protein S14p/S29e family protein [Prunus dulcis]4.4e-1292.11Show/hide
Query:  IAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        + FRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK N
Subjt:  IAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

KYP47782.1 40S ribosomal protein S29 [Cajanus cajan]2.0e-1294.87Show/hide
Query:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Subjt:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

MQM20640.1 hypothetical protein [Colocasia esculenta]2.0e-1294.87Show/hide
Query:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Subjt:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

PKA51526.1 40S ribosomal protein S29 [Apostasia shenzhenica]7.5e-1292.31Show/hide
Query:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV+
Subjt:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

TrEMBL top hitse value%identityAlignment
A0A0E0FCF3 Uncharacterized protein3.6e-1251.81Show/hide
Query:  PPTILIHVQRFSLNCSYNFDLIGPNFGANLLSVVVSGIRLGFSLTNSIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        PP  L+H  R  +       L G   G    + ++ GI++G         RVCGNPHGLIRKYGLMCCRQCFRSNAK+IGFIK
Subjt:  PPTILIHVQRFSLNCSYNFDLIGPNFGANLLSVVVSGIRLGFSLTNSIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

A0A0S3T7T0 Uncharacterized protein2.1e-12100Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

A0A151RZ09 40S ribosomal protein S299.5e-1394.87Show/hide
Query:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
Subjt:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

A0A2I0A7K3 40S ribosomal protein S293.6e-1292.31Show/hide
Query:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        S A RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV+
Subjt:  SIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

A0A4Y1S112 Ribosomal protein S14p/S29e family protein2.1e-1292.11Show/hide
Query:  IAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        + FRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK N
Subjt:  IAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

SwissProt top hitse value%identityAlignment
P62273 40S ribosomal protein S291.4e-0874.29Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK++
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

P62274 40S ribosomal protein S291.4e-0874.29Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK++
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

P62276 40S ribosomal protein S291.4e-0874.29Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK++
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN

Q5I7K3 40S ribosomal protein S295.9e-1290.91Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S294.5e-1293.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein3.2e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein3.2e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein3.2e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGGGTCATAAGAGGCCGTGGAAAAGCGGTTCTTTTGTCCACGATTTTGATTCGGTGATTAAACGGTGCGTTTCAAGAGGCGGTTGCTATTGGTATCCGGGAGC
TGCTCTATATAAACGATGCAGCCGTCTAGGGTTACAAAGTTTTGCGAATTTAGCGAAGCGGCTGTCAGAGTTGAAAAGGGTTTCTAAGGTAATCGATCAACGAAGAAGAC
GATGGGGCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGGTATGCCTCCTCCTACAATTTTGATCCATGTTCAACGCTTCTCTTTG
AACTGTTCATATAATTTTGATCTTATTGGCCCTAATTTCGGGGCGAATCTCTTATCTGTTGTCGTATCTGGCATTCGACTGGGATTTTCTTTGACCAATTCGATTGCATT
CCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGGTAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGGGTCATAAGAGGCCGTGGAAAAGCGGTTCTTTTGTCCACGATTTTGATTCGGTGATTAAACGGTGCGTTTCAAGAGGCGGTTGCTATTGGTATCCGGGAGC
TGCTCTATATAAACGATGCAGCCGTCTAGGGTTACAAAGTTTTGCGAATTTAGCGAAGCGGCTGTCAGAGTTGAAAAGGGTTTCTAAGGTAATCGATCAACGAAGAAGAC
GATGGGGCATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGTACTTGGTATGCCTCCTCCTACAATTTTGATCCATGTTCAACGCTTCTCTTTG
AACTGTTCATATAATTTTGATCTTATTGGCCCTAATTTCGGGGCGAATCTCTTATCTGTTGTCGTATCTGGCATTCGACTGGGATTTTCTTTGACCAATTCGATTGCATT
CCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGGTAAATTAA
Protein sequenceShow/hide protein sequence
MNLGHKRPWKSGSFVHDFDSVIKRCVSRGGCYWYPGAALYKRCSRLGLQSFANLAKRLSELKRVSKVIDQRRRRWGIQTCGIHIQRTMDLVLVLGMPPPTILIHVQRFSL
NCSYNFDLIGPNFGANLLSVVVSGIRLGFSLTNSIAFRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN