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ClCG05G021300 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G021300
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTranslation initiation factor IF-2, putative isoform 1
Genome locationCG_Chr05:33279043..33282007
RNA-Seq ExpressionClCG05G021300
SyntenyClCG05G021300
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034696.1 Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa]3.7e-11291.3Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELRLLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT
        WKDTEDELHTNPADG+DIHASLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD+LQTPG+SNQRLSIGMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]2.8e-11289.63Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSD------SDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQ
        MARRKAKK+VKKSSPSP R+AKD +ANELKS+      SDEDV RHA AIRAIRDVEI+RLITELRLLRSYFN+EQLQTPLLQFF+EKLP+LSISRRGEQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSD------SDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSI
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYP CSAGMRSFNGFE SSKSVKTNPFNVE LQIPNF LEEPSDNMVLGMPD+LQTPGVSNQRLSI
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_016900279.1 PREDICTED: uncharacterized protein LOC103489436 [Cucumis melo]7.9e-11591.49Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELRLLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT
        WKDTEDELHTNPADG+DIHASLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD+LQTPG+SNQRLSIGMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_031741813.1 uncharacterized protein LOC101204054 [Cucumis sativus]2.8e-11289.17Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARRKAKKTVKKSSPS GRDAKDEA N+LK+DSDEDV RHAAAIRAIRDVEI+RLIT LRLLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEV+
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGV-----SNQRLSIG
        WKDTEDELHTNPADG+DIHASLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSD+M LGMPD++QTPGV     SNQRLSIG
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGV-----SNQRLSIG

Query:  MTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        MTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  MTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_038891412.1 uncharacterized protein LOC120080833 [Benincasa hispida]2.2e-11794.44Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARR+AKKTVKKSSPSPGRDAKDEAANELKSD DEDV RHAAAIRAIRDVEI+RLITELRLLRSYFN+EQLQTPLLQFF+EKLPNLSISRRGEQGEIEVQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT
        WKDTEDELHTNPADGIDIHASLLH LSTAYPYCSAGMRSFNGFE SSKSVKTNPFNVE LQIPN  LEEPSDNMVLGMP++LQTPGVSNQRLSIGMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

TrEMBL top hitse value%identityAlignment
A0A0A0KK81 Uncharacterized protein2.3e-10789.36Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARRKAKKTVKKSSPSP  +AKDEAAN      DEDV RHAAAIRAIRDVEI+RLIT LRLLRSYFN+EQLQTPLLQFF+EKLP LSISR GEQGEIEVQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT
        WKDTEDEL TNPADGIDIHASLLHRLS AYP CSAGMRSFNGFE SSKSVKTNPF VE LQIPNFVLEEPSDN+VLGMPD+ QTPGVSNQRLSIGMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A0A0KRH4 Uncharacterized protein1.4e-11289.17Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARRKAKKTVKKSSPS GRDAKDEA N+LK+DSDEDV RHAAAIRAIRDVEI+RLIT LRLLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEV+
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGV-----SNQRLSIG
        WKDTEDELHTNPADG+DIHASLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSD+M LGMPD++QTPGV     SNQRLSIG
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGV-----SNQRLSIG

Query:  MTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        MTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  MTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A1S4DWB9 uncharacterized protein LOC1034894363.8e-11591.49Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELRLLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT
        WKDTEDELHTNPADG+DIHASLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD+LQTPG+SNQRLSIGMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A5A7SXV4 Translation initiation factor IF-2, putative isoform 11.8e-11291.3Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELRLLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT
        WKDTEDELHTNPADG+DIHASLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD+LQTPG+SNQRLSIGMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A6J1ILD3 uncharacterized protein LOC1114784966.3e-11088.33Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSD------SDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQ
        MARRKAKK+VKKSSPSP R+AKD +ANELKS+      SDEDV RHA AIRAIRDVEI+RLITELRLLRSYFN+EQLQTPLLQFF EKLP+LSISRRGEQ
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSD------SDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSI
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYP CSAG+RSFNGFE SSKSVKTNPFNVE LQIPNFVLEEPSDNMVLGMPD+LQTPG SNQRLSI
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        GMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G39630.1 unknown protein5.0e-5149.57Show/hide
Query:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ
        M +RKAK+ VK +      + +     + +   DE+V R  AAIRAIRDVEI++++T LRLLRSYF EEQL TP+L FFKE LP+LSISR  E GEIE++
Subjt:  MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT
        W+D   +      +G+D++ S+L RLS  +    +   S  G++L   +VK N    +  Q+ N V +  S+N +L   D  QTPGV+ QRLS GMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE
         RLPK GEM++S+HGSPLGVYKED NM AI+E
Subjt:  RRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCTAGCCCTTCACCTGGACGAGACGCAAAAGATGAAGCAGCGAATGAATTGAAGAGTGACTCCGACGAGGATGT
CGGACGGCATGCTGCTGCAATTCGTGCCATTCGGGATGTGGAGATCCAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACGAAGAGCAATTGCAAACTC
CTCTATTGCAATTTTTCAAAGAGAAACTTCCAAACTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTGCACACC
AATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTTACTGCTCTGCCGGAATGCGATCGTTTAATGGATTTGAACTTTCCAG
TAAATCAGTGAAAACAAATCCTTTTAATGTTGAGACCCTACAAATTCCAAACTTCGTTTTGGAGGAGCCCTCAGATAATATGGTGCTTGGCATGCCAGACGTTCTCCAAA
CTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGGATGACACCGAAAACCCGAAGACTTCCAAAGCCAGGCGAGATGCTCGTGTCTATCCATGGATCCCCCCTTGGTGTT
TACAAAGAAGACAACATGGAAGCAATCCATGAATCAGAAGAGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCTAGCCCTTCACCTGGACGAGACGCAAAAGATGAAGCAGCGAATGAATTGAAGAGTGACTCCGACGAGGATGT
CGGACGGCATGCTGCTGCAATTCGTGCCATTCGGGATGTGGAGATCCAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACGAAGAGCAATTGCAAACTC
CTCTATTGCAATTTTTCAAAGAGAAACTTCCAAACTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTGCACACC
AATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTTACTGCTCTGCCGGAATGCGATCGTTTAATGGATTTGAACTTTCCAG
TAAATCAGTGAAAACAAATCCTTTTAATGTTGAGACCCTACAAATTCCAAACTTCGTTTTGGAGGAGCCCTCAGATAATATGGTGCTTGGCATGCCAGACGTTCTCCAAA
CTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGGATGACACCGAAAACCCGAAGACTTCCAAAGCCAGGCGAGATGCTCGTGTCTATCCATGGATCCCCCCTTGGTGTT
TACAAAGAAGACAACATGGAAGCAATCCATGAATCAGAAGAGGGTTGA
Protein sequenceShow/hide protein sequence
MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHT
NPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGV
YKEDNMEAIHESEEG