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ClCG05G021730 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G021730
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionR3H domain-containing protein 2-like
Genome locationCG_Chr05:33821412..33821841
RNA-Seq ExpressionClCG05G021730
SyntenyClCG05G021730
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034658.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa]4.2e-0776.92Show/hide
Query:  EFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS
        EFRVSV CFT++GS AEDIE PESWKVA  +EAVRQ NS
Subjt:  EFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS

KAG6573881.1 R3H domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia]7.2e-0743.96Show/hide
Query:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN
        MDGS  ED+  PESW+VA L+EA+ +L         NSKSL+H V  AAL   S +A                SED I QVD+FLR+  HN
Subjt:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN

KGN52196.1 hypothetical protein Csa_008631 [Cucumis sativus]7.4e-1263.01Show/hide
Query:  MHFLSISSLAATVAINQAKFRPSID-------LYEFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS
        MHFLSISSLA  V   +    PSI        + EFRVSVLCFT +GS AE+IEGPESWKVA L+EAVRQ NS
Subjt:  MHFLSISSLAATVAINQAKFRPSID-------LYEFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS

XP_022968225.1 R3H domain-containing protein 1-like [Cucurbita maxima]7.2e-0743.96Show/hide
Query:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN
        MDGS  ED+  PESW+VA L+EA+ +L         NSKSL+H V  AAL   S +A                SED I QVD+FLR+  HN
Subjt:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN

XP_023541781.1 R3H domain-containing protein 1-like [Cucurbita pepo subsp. pepo]7.2e-0743.96Show/hide
Query:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN
        MDGS  ED+  PESW+VA L+EA+ +L         NSKSL+H V  AAL   S +A                SED I QVD+FLR+  HN
Subjt:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN

TrEMBL top hitse value%identityAlignment
A0A0A0KWM8 Uncharacterized protein3.6e-1263.01Show/hide
Query:  MHFLSISSLAATVAINQAKFRPSID-------LYEFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS
        MHFLSISSLA  V   +    PSI        + EFRVSVLCFT +GS AE+IEGPESWKVA L+EAVRQ NS
Subjt:  MHFLSISSLAATVAINQAKFRPSID-------LYEFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS

A0A5D3CFX4 R3H domain-containing protein 2-like2.0e-0776.92Show/hide
Query:  EFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS
        EFRVSV CFT++GS AEDIE PESWKVA  +EAVRQ NS
Subjt:  EFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNS

A0A6J1DB08 R3H domain-containing protein 2-like4.3e-0541.86Show/hide
Query:  MDGSVAEDIEGPESWKVAALNEAVRQL----------NSKSLEHFVVGAA--------LSDRSIAAEMSEDSITQVDRFLRQTFHN
        M+GS  ED+  P+SW+VA L+EA+ +L          NS+SL+H V  AA         S  S    +SED I QVD+FLR+  HN
Subjt:  MDGSVAEDIEGPESWKVAALNEAVRQL----------NSKSLEHFVVGAA--------LSDRSIAAEMSEDSITQVDRFLRQTFHN

A0A6J1G0Z8 R3H domain-containing protein 1-like3.5e-0743.96Show/hide
Query:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN
        MDGS  ED+  PESW+VA L+EA+ +L         NSKSL+H V  AAL   S +A                SED I QVD+FLR+  HN
Subjt:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN

A0A6J1HWM6 R3H domain-containing protein 1-like3.5e-0743.96Show/hide
Query:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN
        MDGS  ED+  PESW+VA L+EA+ +L         NSKSL+H V  AAL   S +A                SED I QVD+FLR+  HN
Subjt:  MDGSVAEDIEGPESWKVAALNEAVRQL---------NSKSLEHFVVGAALSDRSIAAEM--------------SEDSITQVDRFLRQTFHN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCAAGCCAAATTTCGTCCCTCCATTGATCTTTATGAGTTTAGAGTTTCGGTCCTTTGTTTTAC
CATGGATGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGAATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTG
TCGGTGCTGCTCTCTCAGATCGTTCGATTGCTGCTGAAATGTCCGAGGATTCTATCACTCAGGTTGATCGGTTCCTTCGCCAGACCTTTCATAATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCAAGCCAAATTTCGTCCCTCCATTGATCTTTATGAGTTTAGAGTTTCGGTCCTTTGTTTTAC
CATGGATGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGAATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTG
TCGGTGCTGCTCTCTCAGATCGTTCGATTGCTGCTGAAATGTCCGAGGATTCTATCACTCAGGTTGATCGGTTCCTTCGCCAGACCTTTCATAATTCTTGA
Protein sequenceShow/hide protein sequence
MHFLSISSLAATVAINQAKFRPSIDLYEFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNSKSLEHFVVGAALSDRSIAAEMSEDSITQVDRFLRQTFHNS