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ClCG05G021800 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G021800
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationCG_Chr05:33850835..33854275
RNA-Seq ExpressionClCG05G021800
SyntenyClCG05G021800
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]2.6e-4589.42Show/hide
Query:  DMDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG
        DMDTSNPAVF NGELL+MH GR+IRAVVQVIQS+GG+VTGKSTDEQ LTVHGLPTVPLMNFVEVVGIAE NK INVEHWTDFG TFD QSYNQLCQLANG
Subjt:  DMDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG

Query:  EFRS
        EFRS
Subjt:  EFRS

XP_004135037.1 replication protein A 14 kDa subunit B [Cucumis sativus]2.2e-4490.29Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]4.0e-4691.26Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]7.5e-4589.32Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELL++H GR+IRAVVQVIQS+GG+VTGKSTDEQ LTVHGLPTVPLMNFVEVVGIAE NK INVEHWTDFGTTFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]4.0e-4693.2Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+ GLPTVPLMNFVEVVGIAE NK INVEHWTDFGTTFDTQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein1.1e-4490.29Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

A0A1S3BGM8 replication protein A 14 kDa subunit B-like1.9e-4691.26Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

A0A5A7SU42 Replication protein A 14 kDa subunit B-like1.9e-4691.26Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

A0A6J1D9X1 replication protein A 14 kDa subunit B-like3.5e-4081.55Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GR+IRAV QV +S+GG+VTGKSTDEQ+LTVHGLP VPLMNFVEV+GIAE NK INVEH TDFG TFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        F+S
Subjt:  FRS

A0A6J1JC99 replication protein A 14 kDa subunit B-like4.0e-4488.35Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELL+MH GR+IRAVVQVIQS+ G+VTGKSTDEQ LTVHGLPTVPLMNFVEVVGIAE NK INVEHWTDFGT FD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FRS
        FRS
Subjt:  FRS

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B3.5e-2958.82Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTS+PA FVNG LL  + G+++RAV+QVI+S+ G V GKSTD+QQ+ V G P  PL  ++EV+GIAE +  I  E WT+FG +FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FR
        FR
Subjt:  FR

Q9LXK1 Replication protein A 14 kDa subunit A1.1e-2555.34Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  PL  ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG

Query:  EFR
        EF+
Subjt:  EFR

Q9SDK9 Replication protein A 14 kDa subunit2.0e-2451.96Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTS PA FVNGE+L M  GRR+R VVQ  +  GG++ G+STD  QLT+ G    P+ ++VE++GIAE N+ I  E  TDFG  FD   +N LC+LANG+
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FR
         +
Subjt:  FR

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein7.6e-2755.34Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  PL  ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG

Query:  EFR
        EF+
Subjt:  EFR

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein7.6e-2755.34Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  PL  ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANG

Query:  EFR
        EF+
Subjt:  EFR

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein2.5e-3058.82Show/hide
Query:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE
        MDTS+PA FVNG LL  + G+++RAV+QVI+S+ G V GKSTD+QQ+ V G P  PL  ++EV+GIAE +  I  E WT+FG +FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGE

Query:  FR
        FR
Subjt:  FR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAACAAGAAACAAAACTATGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCA
AGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTG
GTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTC
AGAAGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCT
ATTTAAAGCAACCGTGACATGTTTCGGCAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAAACAAGAAACAAAACTATGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCA
AGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTG
GTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTC
AGAAGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCT
ATTTAAAGCAACCGTGACATGTTTCGGCAGTTAA
Protein sequenceShow/hide protein sequence
MINKKQNYDMDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPLMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEF
RSHEKRQRYNLLCDYESSMLVSCNSCGVLTCLTAVNLFKATVTCFGS