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ClCG05G021830 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G021830
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationCG_Chr05:33867243..33873310
RNA-Seq ExpressionClCG05G021830
SyntenyClCG05G021830
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446752.1 PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo]5.8e-4779.86Show/hide
Query:  RKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTGG
        R+GI LIFL+FCST+AISS ALQQQIF   TESNYQQKTYTRK GK GVTNQI RRYSAS +TVSN IRR       A  G+AA GGGENGGGSRPHTGG
Subjt:  RKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTGG

Query:  GTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        GTAVIPVYAAGSAQARHRQGRPHNAGN YENN GLL AAVLAA+
Subjt:  GTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

XP_011655831.2 glycine-rich protein DOT1 [Cucumis sativus]5.8e-4778.29Show/hide
Query:  MGRRKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGS-AGHGSAGRG----SAAGGGGENGG
        MGRR+GI LIFL+FCST+AISS ALQQQIF   TESNYQQKTYT+KHGK GVTNQI+RRYS+S +TVSN IRRGS +G GS G G    +AA GGGEN G
Subjt:  MGRRKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGS-AGHGSAGRG----SAAGGGGENGG

Query:  GSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        GSRP TGGGTAVIPVYAAGSAQA HRQGR HNAGN YENNMGLL AAVLAA+
Subjt:  GSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]7.1e-3766.67Show/hide
Query:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-
        MGRR+ + L+FL+FCST+   S+ALQQQI  TESNY QKT   KHGKDGVTN+I   YSA  +TVS GI     GHGS      A GGGENGGG RP   
Subjt:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-

Query:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAML
        GGG AVIPVYAAGSAQA HRQGR  NAGNHYENNMGLL A+VLAA++
Subjt:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAML

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]7.1e-3767.12Show/hide
Query:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-
        MGRR+ + L+FL+FCST+   S+ALQQQI  TESNY QKT   KHGKDGVTN+I   YSA  +TVS GI     GHGS      A GGGENGGG RP   
Subjt:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-

Query:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        GGG AVIPVYAAGSAQA HRQGR  NAGNHYENNMGLL A+VLAA+
Subjt:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]1.1e-4574.48Show/hide
Query:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTG
        MGRR+ + LI L+ CSTMAISS ALQQQIF TESNYQQKTYT K  KDG+TNQI RRYSA+ +TVSNGI          G+GSA  GGGENGGGSRPH G
Subjt:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTG

Query:  GGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        GGTAVIPVYAAGSAQA HRQGRPHNAGN +ENN GLL AAVLAA+
Subjt:  GGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein2.5e-4878.23Show/hide
Query:  MGRRKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPH
        MGRR+GI LIFL+FCST+AISS ALQQQIF   TESNYQQKTYT+KHGK GVTNQI+RRYS+S +TVSN IRRGS   G  G GSAA  GG   GGSRP 
Subjt:  MGRRKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPH

Query:  TGGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        TGGGTAVIPVYAAGSAQA HRQGR HNAGN YENNMGLL AAVLAA+
Subjt:  TGGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

A0A1S3BFU8 uncharacterized protein LOC1034893822.8e-4779.86Show/hide
Query:  RKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTGG
        R+GI LIFL+FCST+AISS ALQQQIF   TESNYQQKTYTRK GK GVTNQI RRYSAS +TVSN IRR       A  G+AA GGGENGGGSRPHTGG
Subjt:  RKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTGG

Query:  GTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        GTAVIPVYAAGSAQARHRQGRPHNAGN YENN GLL AAVLAA+
Subjt:  GTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

A0A5A7SUI0 Uncharacterized protein2.8e-4779.86Show/hide
Query:  RKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTGG
        R+GI LIFL+FCST+AISS ALQQQIF   TESNYQQKTYTRK GK GVTNQI RRYSAS +TVSN IRR       A  G+AA GGGENGGGSRPHTGG
Subjt:  RKGIILIFLMFCSTMAISSTALQQQIF--LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTGG

Query:  GTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        GTAVIPVYAAGSAQARHRQGRPHNAGN YENN GLL AAVLAA+
Subjt:  GTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like3.4e-3766.67Show/hide
Query:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-
        MGRR+ + L+FL+FCST+   S+ALQQQI  TESNY QKT   KHGKDGVTN+I   YSA  +TVS GI     GHGS      A GGGENGGG RP   
Subjt:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-

Query:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAML
        GGG AVIPVYAAGSAQA HRQGR  NAGNHYENNMGLL A+VLAA++
Subjt:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAML

A0A6J1JB47 uncharacterized protein LOC1114851592.9e-3665.75Show/hide
Query:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-
        MGRR+ + L+FL+FCST+   S+A QQQI  TE NY QKT   KHG+DGVTN+I   YSA  +TVS GI     GHGS      A GGGENGGG RP   
Subjt:  MGRRKGIILIFLMFCSTMAISSTALQQQIFLTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHT-

Query:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM
        GGG AVIPVYAAGSAQA HRQGRP NAGNHYENNMGLL A+VLAA+
Subjt:  GGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAAVLAAM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAACATGGTACCAGATACAATACAAGTACAATAATACCTCATGAGGGTCGACATGGAGATGCAAATGTGATCCCAATACATATAGCTCTCGCAGGTGGAGGCGG
AGGCGCAGGCGGAGGCGCAGGAGGAAGAGGCGGAGGTTTAGGTGGCAGCAGCCACGGAGGAGGAGGTGACAGTGGCACAGGAAATCGGCATCAAAACTACATAAGAGAGA
AGCTAGCTGTTTCTATTACAATGGGAAGAAGAAAAGGGATAATATTGATTTTCTTGATGTTTTGTTCTACCATGGCCATTTCATCTACTGCTCTCCAACAACAAATCTTC
CTAACAGAGTCTAATTACCAACAGAAAACTTACACAAGAAAACATGGCAAAGATGGGGTTACTAACCAGATTGACAGAAGATACAGTGCAAGTCCAGTCACCGTTTCTAA
TGGGATTCGTCGTGGAAGTGCAGGTCATGGAAGTGCAGGTCGTGGAAGTGCAGCCGGCGGCGGTGGAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTACAG
CCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCAGGAAATCACTATGAGAACAACATGGGGCTTCTGACAGCTGCA
GTTTTGGCCGCCATGCTCATCTCTATAGAGTTTTCTGATATCAGGGCTGTCTCCATAGGGACACAAGAATATTGTTACAAACTTACATGTGCTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAACATGGTACCAGATACAATACAAGTACAATAATACCTCATGAGGGTCGACATGGAGATGCAAATGTGATCCCAATACATATAGCTCTCGCAGGTGGAGGCGG
AGGCGCAGGCGGAGGCGCAGGAGGAAGAGGCGGAGGTTTAGGTGGCAGCAGCCACGGAGGAGGAGGTGACAGTGGCACAGGAAATCGGCATCAAAACTACATAAGAGAGA
AGCTAGCTGTTTCTATTACAATGGGAAGAAGAAAAGGGATAATATTGATTTTCTTGATGTTTTGTTCTACCATGGCCATTTCATCTACTGCTCTCCAACAACAAATCTTC
CTAACAGAGTCTAATTACCAACAGAAAACTTACACAAGAAAACATGGCAAAGATGGGGTTACTAACCAGATTGACAGAAGATACAGTGCAAGTCCAGTCACCGTTTCTAA
TGGGATTCGTCGTGGAAGTGCAGGTCATGGAAGTGCAGGTCGTGGAAGTGCAGCCGGCGGCGGTGGAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTACAG
CCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCAGGAAATCACTATGAGAACAACATGGGGCTTCTGACAGCTGCA
GTTTTGGCCGCCATGCTCATCTCTATAGAGTTTTCTGATATCAGGGCTGTCTCCATAGGGACACAAGAATATTGTTACAAACTTACATGTGCTGATTGAGGTGTGTGCTT
CATCTTTCTTGTTGGACCTTCATTTCCTGTTAAAGGTCAAGAAAGGGCAAAATATTTGGCTTGCAAATGATTGTATGTACAGAGACAGAACCTCATAAAATCTTTTTCTT
TTCTTTTTCTTTCTTGGGTAACCATTGTATTGTACATAGACAGTAGTCTTTTAATTGCGTCAATTAGATCATTTTCTGACAGGCATTACAA
Protein sequenceShow/hide protein sequence
MGKHGTRYNTSTIIPHEGRHGDANVIPIHIALAGGGGGAGGGAGGRGGGLGGSSHGGGGDSGTGNRHQNYIREKLAVSITMGRRKGIILIFLMFCSTMAISSTALQQQIF
LTESNYQQKTYTRKHGKDGVTNQIDRRYSASPVTVSNGIRRGSAGHGSAGRGSAAGGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNHYENNMGLLTAA
VLAAMLISIEFSDIRAVSIGTQEYCYKLTCAD