; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G024650 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G024650
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRRM domain-containing protein
Genome locationCG_Chr05:36196432..36198111
RNA-Seq ExpressionClCG05G024650
SyntenyClCG05G024650
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK15537.1 thaumatin-like protein 1 [Cucumis melo var. makuwa]7.5e-8791.3Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD
        MGRKRDKPYPS HLPTS +KRRRPPP T DDD++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM A+LD
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTI N  RS+SSSRSDVPFRGREVV
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

XP_008446301.1 PREDICTED: uncharacterized protein At1g27050 [Cucumis melo]7.5e-8791.3Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD
        MGRKRDKPYPS HLPTS +KRRRPPP T DDD++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM A+LD
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTI N  RS+SSSRSDVPFRGREVV
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

XP_011655662.1 uncharacterized protein At1g27050 [Cucumis sativus]3.4e-8791.3Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD
        MGRKRDKPYPS HLPTS  KRRRPPP TE+DD++KP+SKPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM A+LD
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS I N  RS+SSSRSDVPFRGREVV
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]4.3e-8286.17Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSPH  TS +KRRR  P    P EDDD+DKPL KPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  ASLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        A+LDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAST+ N  +S+SSSRSD PFRGREVV
Subjt:  ASLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]1.8e-8892.02Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPS HLPTSV+KRRRPPP    PTED+D+DKPLSKPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  ASLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        A+LDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTI N  RS+SSSRSDVPFRGREVV
Subjt:  ASLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

TrEMBL top hitse value%identityAlignment
A0A0A0KTW9 RRM domain-containing protein1.6e-8791.3Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD
        MGRKRDKPYPS HLPTS  KRRRPPP TE+DD++KP+SKPAPPLALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM A+LD
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS I N  RS+SSSRSDVPFRGREVV
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

A0A1S3BE88 uncharacterized protein At1g270503.6e-8791.3Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD
        MGRKRDKPYPS HLPTS +KRRRPPP T DDD++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM A+LD
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTI N  RS+SSSRSDVPFRGREVV
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-543.6e-8791.3Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD
        MGRKRDKPYPS HLPTS +KRRRPPP T DDD++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM A+LD
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTI N  RS+SSSRSDVPFRGREVV
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

A0A5D3CUC0 Thaumatin-like protein 13.6e-8791.3Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD
        MGRKRDKPYPS HLPTS +KRRRPPP T DDD++KP+SKPAPPLALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM A+LD
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTI N  RS+SSSRSDVPFRGREVV
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

A0A6J1GYQ1 uncharacterized protein At1g270502.7e-8286.17Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MGRKRDKPYPSPH  TS +KRRR  P    P EDDD+DKPL KPAPP+ALV+VDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPP----PTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  ASLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV
        A+LDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTI N  +S+SSSRSD PFRGREVV
Subjt:  ASLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVV

SwissProt top hitse value%identityAlignment
P0CJ66 Uncharacterized protein At1g270502.7e-4756.82Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPT---EDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAA
        M RKRDKPY + H P  +SKRRRP  P+    D+ IDKP++KP PP ALV++ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A 
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPT---EDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAA

Query:  SLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSS
        S +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS I N  RSD++
Subjt:  SLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSS

Arabidopsis top hitse value%identityAlignment
AT1G27050.1 homeobox protein 541.9e-4856.82Show/hide
Query:  MGRKRDKPYPSPHLPTSVSKRRRPPPPT---EDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAA
        M RKRDKPY + H P  +SKRRRP  P+    D+ IDKP++KP PP ALV++ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A 
Subjt:  MGRKRDKPYPSPHLPTSVSKRRRPPPPT---EDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAA

Query:  SLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSS
        S +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS I N  RSD++
Subjt:  SLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGCAAGAGAGATAAACCCTACCCTTCCCCCCACCTCCCTACCTCCGTCTCTAAGAGACGACGCCCTCCGCCGCCCACGGAGGACGATGATATAGACAAGCCCTT
GTCGAAGCCTGCGCCGCCGCTTGCCCTAGTCATCGTTGACCTACCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCC
GCATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCCGCCGATGCTGCCATGGCCGCCTCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAA
AAGGTTCAGGTGCTATGGGCGAATGATCCTCAAGTCCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTGTCTTCAAAGCTCTTGCGGGCGGAAGT
GCCGCTGAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTTTCAACTCCAGTAGAAGCGACAGTTCCTCACGGTCGGATGTGCCTTTCAGGGGCAGGGAAGTTG
TGCAGAGAAAGCATGCAATTTCACCAACCTAA
mRNA sequenceShow/hide mRNA sequence
GGCCGGAGGTGGAATTGGGGCATAAAGCAAAATCATCGTCTTTATTGGCGCCGCCCATTCTTCGCCGCCGCACCACCGAGAAGCCATGGGTCGCAAGAGAGATAAACCCT
ACCCTTCCCCCCACCTCCCTACCTCCGTCTCTAAGAGACGACGCCCTCCGCCGCCCACGGAGGACGATGATATAGACAAGCCCTTGTCGAAGCCTGCGCCGCCGCTTGCC
CTAGTCATCGTTGACCTACCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTA
CATCACTTATCGCACCAAAGACTCCGCCGATGCTGCCATGGCCGCCTCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAAAAGGTTCAGGTGCTATGGGCGAATG
ATCCTCAAGTCCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTGTCTTCAAAGCTCTTGCGGGCGGAAGTGCCGCTGAGCAGACATGGAAGAAGC
AATAAGCTTGCTTCAACCATTTTCAACTCCAGTAGAAGCGACAGTTCCTCACGGTCGGATGTGCCTTTCAGGGGCAGGGAAGTTGTGCAGAGAAAGCATGCAATTTCACC
AACCTAA
Protein sequenceShow/hide protein sequence
MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLDPSFAFTIDSK
KVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVVQRKHAISPT