CuGenDBv2

Gene ID	ClCG06G000130
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LysM domain-containing protein
Genome location	CG_Chr06:143041..143349
RNA-Seq Expression	ClCG06G000130
Synteny	ClCG06G000130
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR018392 - LysM domain IPR036779 - LysM domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040027.1 hypothetical protein E6C27_scaffold122G003130 [Cucumis melo var. makuwa]

1.8e-26

82.35

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Query:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL
        MAS +SVF I+VM +I+VVAS  AESKPC+DIY+VKEGETLHTISAKC DPFIVD+NP IQDSDDVFPGLLIQITPT INSRKLL
Subjt:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL

KAG6574776.1 hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-23

68.13

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Query:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF
        SPMA   SC SVFI+  ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD+NPQIQDSDDVFPGLLI+ITP+ +NSRKLLF
Subjt:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF

KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]

6.0e-27

82.35

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Query:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL
        MAS +SVF ++VM +IIVVAS  AES+PCDDIY+VKEGETLHTISAKC DPFIVD+NP IQDSDDVFPGLLIQITPT INSRKLL
Subjt:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL

XP_022959284.1 uncharacterized protein LOC111460313 [Cucurbita moschata]

5.3e-23

68.13

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Query:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF
        SPMA   SC SVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD+NPQIQDSDDVFPGLLI+ITP+ +NSRKLLF
Subjt:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF

XP_023006696.1 uncharacterized protein LOC111499354 [Cucurbita maxima]

1.4e-23

68.13

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Query:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF
        SPMA   SCYSVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD+NPQIQDSDDVFPGLLI+ITP+ +NSRKL F
Subjt:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9P3 LysM domain-containing protein

2.9e-27

82.35

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Query:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL
        MAS +SVF ++VM +IIVVAS  AES+PCDDIY+VKEGETLHTISAKC DPFIVD+NP IQDSDDVFPGLLIQITPT INSRKLL
Subjt:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL

A0A5A7PQV5 Peptidoglycan-binding LysM domain-containing family protein

1.8e-16

63.24

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Query:  VVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL
        VV +     +PCD+IY+V EGETLHTIS KC DPFIV+HNP I D DDVFPGL+I+ITP   N+R L+
Subjt:  VVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL

A0A5D3DLK6 Uncharacterized protein

8.5e-27

82.35

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Query:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL
        MAS +SVF I+VM +I+VVAS  AESKPC+DIY+VKEGETLHTISAKC DPFIVD+NP IQDSDDVFPGLLIQITPT INSRKLL
Subjt:  MASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLL

A0A6J1H7L7 uncharacterized protein LOC111460313

2.6e-23

68.13

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Query:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF
        SPMA   SC SVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD+NPQIQDSDDVFPGLLI+ITP+ +NSRKLLF
Subjt:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF

A0A6J1KYG6 uncharacterized protein LOC111499354

6.7e-24

68.13

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Query:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF
        SPMA   SCYSVFI   ++++     A A+S PCDDIY+V+EGE+LH+ISAKC+DPFIVD+NPQIQDSDDVFPGLLI+ITP+ +NSRKL F
Subjt:  SPMA---SCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52790.1 peptidoglycan-binding LysM domain-containing protein

2.5e-15

71.43

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Query:  CDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPT
        CD+IY VKEGETL TIS KC DP+IV+ NP I D DD+FPGLLI+ITP+
Subjt:  CDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPT

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein

7.4e-15

64.58

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Query:  KPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQI
        +PC+++Y+V EG+TLH+IS KC DPFIV+ NP I D DDVFPGLLI++
Subjt:  KPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein

7.9e-17

48.35

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Query:  ASCYSVFIISVMVVIIV--------VASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKL
        A C +V ++S+++++ V        +  ++  +KPC++IYIV EGETLHTI  KC DPFIV+ NP I D DDVFPGL+++I P   N RKL
Subjt:  ASCYSVFIISVMVVIIV--------VASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKL

Sequences

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CDS sequence

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ATGATGATACATCTCAGGCTGGTGTCTCCCATGGCTTCTTGCTACTCTGTTTTCATAATAAGTGTGATGGTGGTGATCATAGTGGTGGCCTCTGCAGAAGCAGAATCCAA
GCCTTGCGACGACATCTACATCGTCAAAGAAGGCGAGACACTGCACACAATCAGCGCCAAGTGCAACGATCCTTTCATTGTTGACCACAATCCACAGATTCAAGACTCAG
ATGATGTTTTCCCAGGACTCCTCATCCAAATTACCCCTACTCCCATCAACTCCAGGAAGTTACTTTTCAGCTATCTACCCCCAATATAA

mRNA sequence

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Protein sequence

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MMIHLRLVSPMASCYSVFIISVMVVIIVVASAEAESKPCDDIYIVKEGETLHTISAKCNDPFIVDHNPQIQDSDDVFPGLLIQITPTPINSRKLLFSYLPPI

ClCG06G000130 (gene) of Watermelon (Charleston Gray) v2.5 genome