; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG06G001680 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G001680
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationCG_Chr06:1722288..1723041
RNA-Seq ExpressionClCG06G001680
SyntenyClCG06G001680
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]1.2e-5184.06Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT
        MLVGTRI+G RR ASS T P+AN     +SSSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT

Query:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
        VITSADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTR
Subjt:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]4.7e-5385.51Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT
        MLVGTRI+G RR ASS T P+AN    +SSSSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT

Query:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
        VITSADKFINKSFLRKVAHIQ+DTKTLPDPVHPDPFTR
Subjt:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]2.0e-5681.29Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN
        M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+AN  N  ++SS SSS+ GGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN

Query:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
         +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTR
Subjt:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]6.4e-5883.23Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN
        M+LFRTSL   NKMWKSMLVGTRI+G RR ASS T P+AN     +SSSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN

Query:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
         +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTR
Subjt:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]6.1e-6185.26Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVV
        MALF TSLT  NK+WK+MLVG+RI+GKRRLASS T PAA NI+ ASSSSSSSSS+KGGSS+SEYMKGEYAPIYIV+GMVAVAVSIGTHTAKQQLLHSPVV
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAA-NIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVV

Query:  NLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
        N +KKKRESIPEV+DPDT+I SA+KFINKSFLRKVAHIQ DTKTLPDPVHP+PFTR
Subjt:  NLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein9.9e-5781.29Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN
        M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+AN  N  ++SS SSS+ GGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN

Query:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
         +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTR
Subjt:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

A0A1S3CBE5 uncharacterized protein LOC1034988993.1e-5883.23Show/hide
Query:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN
        M+LFRTSL   NKMWKSMLVGTRI+G RR ASS T P+AN     +SSSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN
Subjt:  MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVN

Query:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
         +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTR
Subjt:  LNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like2.3e-5385.51Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT
        MLVGTRI+G RR ASS T P+AN    +SSSSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT

Query:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
        VITSADKFINKSFLRKVAHIQ+DTKTLPDPVHPDPFTR
Subjt:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X11.5e-4474.15Show/hide
Query:  QNKMWKSMLVG--TRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRES
        + K+WKSMLVG  +RIEGKR  ASS T        ASSSSSS          SEYMKGEYAPIYIVMGMV VAV+IGTHTAKQQLLHSPVV L+KKKRES
Subjt:  QNKMWKSMLVG--TRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRES

Query:  IPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
        IPEV+DPDTVITSADKF+NKSFLRKVAHIQ+  KTL DP HPDPFTR
Subjt:  IPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

E5GB52 Uncharacterized protein5.6e-5284.06Show/hide
Query:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT
        MLVGTRI+G RR ASS T P+AN     +SSSSSSS+KGGS  SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDT
Subjt:  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDT

Query:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR
        VITSADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTR
Subjt:  VITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein7.3e-2037.5Show/hide
Query:  VGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVI
        VG +  G RR A++    A    N  S                 + GE+AP+ I+ G V +AV +  H+ KQQL+H+P ++  K +R ++ EV+DP+  +
Subjt:  VGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQNDTKT-LPDPVHPDPFT--RSTPFLSLISLTDK
        +SADKFINKS+LRKV  IQ+ +K  L DP  P+PFT  R+   L+ + +  K
Subjt:  TSADKFINKSFLRKVAHIQNDTKT-LPDPVHPDPFT--RSTPFLSLISLTDK

AT5G07330.1 unknown protein9.9e-1732.62Show/hide
Query:  IEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSAD
        ++  R    + T P +    A S++++    +  ++ +   KG++ P+Y+ +G+++++V+ G +TA   L  +P V +NKK RE++PE+EDPD V+  AD
Subjt:  IEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSAD

Query:  KFINKSFLRKVAHIQNDTK--TLPDPVHPDPFTRSTPFLSL
        +F N+S+ RK+AH+Q   K   + DP+  D F      L+L
Subjt:  KFINKSFLRKVAHIQNDTK--TLPDPVHPDPFTRSTPFLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACA
ACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCA
ATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACAGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAG
AGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGAC
ACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGTCAACCCCTTTTCTTTCCCTCATTTCCTTGACAGACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACA
ACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCA
ATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACAGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAG
AGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGAC
ACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGTCAACCCCTTTTCTTTCCCTCATTTCCTTGACAGACAAATAA
Protein sequenceShow/hide protein sequence
MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKK
RESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRSTPFLSLISLTDK