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ClCG06G004680 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G004680
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description60S ribosomal protein L29
Genome locationCG_Chr06:5321651..5322079
RNA-Seq ExpressionClCG06G004680
SyntenyClCG06G004680
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002673 - Ribosomal protein L29e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022930218.1 60S ribosomal protein L29-1 [Cucurbita moschata]7.2e-2295Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEE
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE A EE
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEE

XP_023000055.1 60S ribosomal protein L29-1 [Cucurbita maxima]4.2e-2293.44Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE A EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

XP_023000056.1 60S ribosomal protein L29-1-like [Cucurbita maxima]9.4e-2291.8Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+  EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

XP_038875270.1 60S ribosomal protein L29-1 [Benincasa hispida]3.8e-2396.72Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENA EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

XP_038875325.1 60S ribosomal protein L29-1-like [Benincasa hispida]1.9e-2295.08Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE A EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

TrEMBL top hitse value%identityAlignment
A0A6J1EUF7 60S ribosomal protein L293.5e-2295Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEE
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE A EE
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEE

A0A6J1H4N3 60S ribosomal protein L296.0e-2291.8Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE   EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

A0A6J1KET9 60S ribosomal protein L294.6e-2291.8Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+  EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

A0A6J1KHA4 60S ribosomal protein L292.0e-2293.44Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE A EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

A0A6J1L4P4 60S ribosomal protein L296.0e-2291.8Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE   EE+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

SwissProt top hitse value%identityAlignment
P47914 60S ribosomal protein L291.5e-1476.92Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK

Q58DW3 60S ribosomal protein L291.5e-1476.92Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK

Q84WM0 60S ribosomal protein L29-29.8e-2285.25Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

Q8HXB8 60S ribosomal protein L291.5e-1476.92Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK

Q9M7X7 60S ribosomal protein L29-11.3e-2183.61Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENA  E+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

Arabidopsis top hitse value%identityAlignment
AT3G06680.1 Ribosomal L29e protein family7.0e-2385.25Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

AT3G06680.2 Ribosomal L29e protein family7.0e-2385.25Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

AT3G06680.3 Ribosomal L29e protein family7.0e-2385.25Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

AT3G06700.1 Ribosomal L29e protein family9.1e-2383.61Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENA  E+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED

AT3G06700.2 Ribosomal L29e protein family9.1e-2383.61Show/hide
Query:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED
        MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENA  E+
Subjt:  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCACGCAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCATACTTCCACCAAAGGGATGGATCC
GAAGTTCCTTAGGAATCAGAGGTACGCGAAGAAACACAATAATAAGAGTGGGGAAAATGCTTTTGAGGAAGATAGTCTTGCTATTTTGACTCAATGTGGAAACTGTTGCT
TCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCACGCAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCATACTTCCACCAAAGGGATGGATCC
GAAGTTCCTTAGGAATCAGAGGTACGCGAAGAAACACAATAATAAGAGTGGGGAAAATGCTTTTGAGGAAGATAGTCTTGCTATTTTGACTCAATGTGGAAACTGTTGCT
TCTGA
Protein sequenceShow/hide protein sequence
MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENAFEEDSLAILTQCGNCCF