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ClCG06G005560 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G005560
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLow-density receptor-like protein
Genome locationCG_Chr06:6297718..6307667
RNA-Seq ExpressionClCG06G005560
SyntenyClCG06G005560
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458514.1 PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo]3.5e-4091.67Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
        MASSTA+I FRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGV D NDGKKAGSVA+RRLLHQ+++
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
XP_011656652.1 uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus]4.5e-4090.72Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQMD
        MASSTA+I FRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHD NDGKKAGS A+RRLLHQ + +
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQMD
XP_011656653.1 uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus]4.5e-4093.62Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
        MASSTA+I FRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHD NDGKKAGS A+RRLLHQ+
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
XP_038875265.1 uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida]3.5e-4093.62Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
        MASSTARI FRVIMVV LLLV FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHD NDGKKAGSVA+RRLLHQ+
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
XP_038875268.1 uncharacterized protein LOC120067764 isoform X2 [Benincasa hispida]1.6e-4094.68Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
        MASSTARI FRVIMVV LLLV FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHD NDGKKAGSVA+RRLLHQL
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
TrEMBL top hitse value%identityAlignment
A0A0A0KBE9 Uncharacterized protein2.9e-4093.62Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
        MASSTA+I FRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHD NDGKKAGS A+RRLLHQ+
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
A0A1S3C7I8 uncharacterized protein LOC103497900 isoform X22.9e-4093.62Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
        MASSTA+I FRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGV D NDGKKAGSVA+RRLLHQ+
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQL
A0A1S3C994 uncharacterized protein LOC103497900 isoform X11.7e-4091.67Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
        MASSTA+I FRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGV D NDGKKAGSVA+RRLLHQ+++
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
A0A6J1ER65 uncharacterized protein LOC111436812 isoform X46.4e-4089.58Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
        MASS ARI FRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQKSVGWYHDESDSGVHD  DGKKAGSVA RRLLHQ QM
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
A0A6J1EUV5 uncharacterized protein LOC111436812 isoform X31.1e-3988.54Show/hide
Query:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
        MASS ARI FRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQKSVGWYHDESDSGVHD  DGKKAGSVA RRLLHQ+Q+
Subjt:  MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G18850.1 unknown protein5.5e-2865.56Show/hide
Query:  ASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLL
        +S T RI FR ++++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+SVGWYHDESDSG  + ++ KK+G    RRLL
Subjt:  ASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTCGACGGCAAGGATTGCGTTTCGCGTTATCATGGTGGTGATCCTCCTCCTCGTCTTATTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGT
ACATGATATTCGTCAGAACAAACAGACCGTCAAGGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCC
ATGACGCAAATGATGGAAAGAAGGCCGGATCGGTTGCTGTTCGGAGGCTTCTTCATCAGTTACAGATGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATTTAAACTACAATACAACTGGCATAAGTGACAAAAATGAAATAGAAACAGATATAAATACCAAGGAGGAAACGCCGAGCTTCCCTTCTTCTTGCCTGATCTAAACATTT
CAACTCCATCGCGGGAATCTCTGAGCTCTCTCTATCTCTCTCTCTGTTTCTCTCTTCCAGACATAGCCACCGGAAACAATGGCGTCGTCGACGGCAAGGATTGCGTTTCG
CGTTATCATGGTGGTGATCCTCCTCCTCGTCTTATTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGATATTCGTCAGAACAAACAGACCGTCA
AGGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGACGCAAATGATGGAAAGAAGGCCGGATCG
GTTGCTGTTCGGAGGCTTCTTCATCAGTTACAGATGGATTGAAATCATCACATCTGAGTAATTCCTTTGAATTTGCTGAATTCATCACATCTGAATTATTTACAAACAGC
CAAACATAGTGCTAAAGAAGATGAGCAGAACCAAGGCAACAAGCCAACAACCACCTATCAAATTAGGCTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MASSTARIAFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDANDGKKAGSVAVRRLLHQLQMD