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ClCG06G007760 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G007760
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDEAD-box ATP-dependent RNA helicase 51-like
Genome locationCG_Chr06:10024090..10027629
RNA-Seq ExpressionClCG06G007760
SyntenyClCG06G007760
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584379.1 DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia]4.6e-1861Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT
        EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQARAIP   +GK  L       GK L FL       ++I+FT
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT

KAG7019966.1 DEAD-box ATP-dependent RNA helicase 27 [Cucurbita argyrosperma subsp. argyrosperma]4.6e-1861Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT
        EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQARAIP   +GK  L       GK L FL       ++I+FT
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT

XP_022924139.1 DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita moschata]4.6e-1861Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT
        EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQARAIP   +GK  L       GK L FL       ++I+FT
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT

XP_023520092.1 DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita pepo subsp. pepo]2.1e-1862Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT
        EDGV+GK EKDE K NE+KKVK GGSGIM+++ F SL+LSEKTLRAIKDMGF+HMTQIQARAIP   +GK  L       GK L FL       ++I+FT
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT

XP_038895340.1 DEAD-box ATP-dependent RNA helicase 51-like [Benincasa hispida]4.9e-2071.26Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL
        EDG+EGK E DE KENEEKKVK GGSGIM +++F SLDLSEKTLRAIKDMGFEHMTQIQA+AIP S  GK  L       GK L FL
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ5 Uncharacterized protein1.5e-1767.82Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL
        EDGVEG+GE+DE K+N   K K GGSGIM+S++F SL+LSEKTLRAIKDMGFEHMTQIQARAIP S  GK  L       GK L FL
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL

A0A1S3C1Z8 DEAD-box ATP-dependent RNA helicase 512.9e-1866.67Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL
        EDGVE +GE+DE  E+++ KVK GGSGIM+S++F SL+LSEKTLRAIKDMGFEHMTQIQARAIP S  GK  L       GK L FL
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL

A0A5D3BGT0 DEAD-box ATP-dependent RNA helicase 512.9e-1866.67Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL
        EDGVE +GE+DE  E+++ KVK GGSGIM+S++F SL+LSEKTLRAIKDMGFEHMTQIQARAIP S  GK  L       GK L FL
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHS--GKIFLELQGLDLGKLLPFL

A0A6J1E8A7 DEAD-box ATP-dependent RNA helicase 51-like2.2e-1861Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT
        EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQARAIP   +GK  L       GK L FL       ++I+FT
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT

A0A6J1KJK9 DEAD-box ATP-dependent RNA helicase 27-like2.5e-1765.52Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL
        +DGVEG+ EKD+ K+NE+KKVK  GSGIM++++F SL+LSEKTLRAIKDMGFEHMTQIQARAIP    GK  L       GK L FL
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL

SwissProt top hitse value%identityAlignment
Q0UR48 ATP-dependent RNA helicase HAS16.1e-0553.7Show/hide
Query:  FHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL
        F  L+LSE+T+ AIK MGFE MT+IQ +AIP   SGK  L       GK L FL
Subjt:  FHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL

Q1EA54 ATP-dependent RNA helicase HAS11.4e-0451.85Show/hide
Query:  FHSLDLSEKTLRAIKDMGFEHMTQIQARAIP--HSGKIFLELQGLDLGKLLPFL
        F  L+LSEKTL+AI++MGFE MT+IQ R IP   +G+  L       GK L FL
Subjt:  FHSLDLSEKTLRAIKDMGFEHMTQIQARAIP--HSGKIFLELQGLDLGKLLPFL

Q84T03 DEAD-box ATP-dependent RNA helicase 271.6e-0844.44Show/hide
Query:  EEDGVEGKGEKDEVKENEEKKVK--IGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL
        EE+  E K +K+  KE + KK K   GGSGI+ ++ F  L +SE T RAI++M + ++TQIQAR+IPH  +GK  +       GK L FL
Subjt:  EEDGVEGKGEKDEVKENEEKKVK--IGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL

Q9LIH9 DEAD-box ATP-dependent RNA helicase 514.1e-0948.84Show/hide
Query:  VEGKGEKDEVKEN--EEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL
        +E + EK E  E+  +EK + I G GIM ++TF SLDLSE+T  AIK+MGF++MTQIQA +I     GK  L       GK L FL
Subjt:  VEGKGEKDEVKEN--EEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL

Q9SB89 DEAD-box ATP-dependent RNA helicase 272.0e-0846.99Show/hide
Query:  EGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIP--HSGKIFLELQGLDLGKLLPFL
        E K E++EV++ EE+K K+  + IM + TF SL LS+ T ++IK+MGF  MTQIQA+AIP    G+  L       GK L FL
Subjt:  EGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIP--HSGKIFLELQGLDLGKLLPFL

Arabidopsis top hitse value%identityAlignment
AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.9e-1048.84Show/hide
Query:  VEGKGEKDEVKEN--EEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL
        +E + EK E  E+  +EK + I G GIM ++TF SLDLSE+T  AIK+MGF++MTQIQA +I     GK  L       GK L FL
Subjt:  VEGKGEKDEVKEN--EEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL

AT5G65900.1 DEA(D/H)-box RNA helicase family protein1.4e-0946.99Show/hide
Query:  EGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIP--HSGKIFLELQGLDLGKLLPFL
        E K E++EV++ EE+K K+  + IM + TF SL LS+ T ++IK+MGF  MTQIQA+AIP    G+  L       GK L FL
Subjt:  EGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIP--HSGKIFLELQGLDLGKLLPFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAATTCCATTACATT
TCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCATTCGGGAAAGATATTCT
TGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGTGTGGAGCTACTACATCACATTCACATCTCCTTTACTCCTCGTAATGGAACTGGTGTTA
TTGTTATTTGCCCAACAAGCTTGCAATGCAGGCTGGATTGGATTGTGCAGTAGGATCCTCCAGATGAACCCAAGGTGCCTCTTACTCCTTAATTATGTTCACGTCTCATT
TAGTATCCTTGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTCGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGAGAAACTGGTTGG
CAATGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAATTCCATTACATT
TCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCATTCGGGAAAGATATTCT
TGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGTGTGGAGCTACTACATCACATTCACATCTCCTTTACTCCTCGTAATGGAACTGGTGTTA
TTGTTATTTGCCCAACAAGCTTGCAATGCAGGCTGGATTGGATTGTGCAGTAGGATCCTCCAGATGAACCCAAGGTGCCTCTTACTCCTTAATTATGTTCACGTCTCATT
TAGTATCCTTGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTCGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGAGAAACTGGTTGG
CAATGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGA
Protein sequenceShow/hide protein sequence
MNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHSGKIFLELQGLDLGKLLPFLYQVWSYYITFTSPLLLVMELVL
LLFAQQACNAGWIGLCSRILQMNPRCLLLLNYVHVSFSILGRGWEGSKGNALLFSIPEGLQFLGYLKVWRNWLAMKKSAKDGYRSYILAYNSQIFS