; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG06G007780 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G007780
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionubiquitin-conjugating enzyme E2 E2-like
Genome locationCG_Chr06:10044218..10044870
RNA-Seq ExpressionClCG06G007780
SyntenyClCG06G007780
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0061631 - ubiquitin conjugating enzyme activity (molecular function)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593782.1 Ubiquitin-conjugating enzyme E2 2, partial [Cucurbita argyrosperma subsp. sororia]2.0e-3646.46Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDC---
        M+LSRL   FS+K SSS+ Y R +T   PP+PI H     P+P   LPI   D  + +   SPP  PI  G+ G  N  +   I  ++   +   D    
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDC---

Query:  --------------------------------------SFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYE
                                              + +  G D   NEEK+SA+YRIENELRAMNE AATHCSFGPVGADI RWEG+VIGPA SCY+
Subjt:  --------------------------------------SFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYE

Query:  GGIFHLSIQFPSDYPLSPPHIKFLTK
        GGIFHLSIQFPS+YPLSPP IKFLTK
Subjt:  GGIFHLSIQFPSDYPLSPPHIKFLTK

XP_022138687.1 ubiquitin-conjugating enzyme E2 5A-like [Momordica charantia]1.9e-3956.52Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTS---AIYRIEN--EKEVSTDCSFEP
        M+LSRLRR FSSK SSSS+Y RL +PP            PP PLPIYH        PPP+P+ I  G     E T+   A  R+E    + VS       
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTS---AIYRIEN--EKEVSTDCSFEP

Query:  VGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        +G     +EEK+SAMYRIENEL+AMNEE+ATHCSFGPVG DIFRWEG+VIGPA SCYE GIF LSI  PSDYP +PP IKF TK
Subjt:  VGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

XP_023000037.1 ubiquitin-conjugating enzyme E2 E3-like [Cucurbita maxima]5.6e-3949.12Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIE------------
        M+L RL   FS+K SSS+ Y RL+T   PPLPI H     P+P   LPI   D  + +   SPPP PI  G+ G  N  +   I  ++            
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIE------------

Query:  --------------------------NEKEVS---TDCSFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYE
                                   + E S      + E  G D   NEEK+S+MYRIENELRAMNE AATHCSFGPVGADIFRWEGVVIGPA SCY+
Subjt:  --------------------------NEKEVS---TDCSFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYE

Query:  GGIFHLSIQFPSDYPLSPPHIKFLTK
        GGIFHLSIQFPS+YPLSPP IKFLTK
Subjt:  GGIFHLSIQFPSDYPLSPPHIKFLTK

XP_023513655.1 ubiquitin-conjugating enzyme E2 E3-like [Cucurbita pepo subsp. pepo]6.9e-3747.58Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNW---SESPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDC---
        M+LS L   FS+K SSS+ Y RL+T   PPLPI H     P+P   LPI   D  +    +SPP  PI  G+ G  N  +   I  ++   +   D    
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNW---SESPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDC---

Query:  ---------------------------------------SFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCY
                                               + +  G D   NEEK+SAMYRIENELRAMNE AATHCSFGPVGADI RWEGVVIGPA SCY
Subjt:  ---------------------------------------SFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCY

Query:  EGGIFHLSIQFPSDYPLSPPHIKFLTK
        +GGIFHLSIQFPS+YPLSPP IKFLTK
Subjt:  EGGIFHLSIQFPSDYPLSPPHIKFLTK

XP_038907075.1 ubiquitin-conjugating enzyme E2 D1-like [Benincasa hispida]2.1e-4663.33Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRP-PSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDCSFEPVGAD
        M  SRLRR FSS PSSSSAYRRLY+PP PI  + TL P+P PSP PI+             PISIG+GGSG                             
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRP-PSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDCSFEPVGAD

Query:  IRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
           NEEKSSAMYRIENELRAMNEEAATHCSFGPVG DIFRWEGVVIGPACSCYEGGIF LSIQFPS+YPL PP+IKFLTK
Subjt:  IRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

TrEMBL top hitse value%identityAlignment
A0A0A0LI75 UBC core domain-containing protein7.9e-3152.22Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDCSFEPVGADI
        M  SRLRR FS KPS        YTP                             SPP +           EEKTS    I+++KE   D S+       
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDCSFEPVGADI

Query:  RENEEKSS-AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
          NEEKSS AMYRIENEL++MNEE ATHCSFGPVG DIFRWEGVVIGPA SCYEGGIFH+SIQFPSDYP +PP I FLTK
Subjt:  RENEEKSS-AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

A0A1S3C6C4 ubiquitin-conjugating enzyme E2 D1-like1.8e-3049.72Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQP-ISIGNGGSGN-EEKTSAIYRIENEKEVSTDCSFEPVGA
        ML SRLRR F+ K SS S     YTP                             +PPP P I   +   GN ++K   I R  NE              
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQP-ISIGNGGSGN-EEKTSAIYRIENEKEVSTDCSFEPVGA

Query:  DIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
             E+ S AMYRIENEL+AMN+E ATHCSFGPVG DIFRWEG+VIGPACSCYEGGIFH+SIQFPSDYP +PP I FLTK
Subjt:  DIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

A0A6J1CDR5 ubiquitin-conjugating enzyme E2 5A-like9.3e-4056.52Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTS---AIYRIEN--EKEVSTDCSFEP
        M+LSRLRR FSSK SSSS+Y RL +PP            PP PLPIYH        PPP+P+ I  G     E T+   A  R+E    + VS       
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTS---AIYRIEN--EKEVSTDCSFEP

Query:  VGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        +G     +EEK+SAMYRIENEL+AMNEE+ATHCSFGPVG DIFRWEG+VIGPA SCYE GIF LSI  PSDYP +PP IKF TK
Subjt:  VGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

A0A6J1HIF1 ubiquitin-conjugating enzyme E2 E2-like1.1e-3546.26Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYT----PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDC--
        M+LSRL   FS+K SSS+ Y R +T    PP+PI H     P+P   LPI   D  + +   SPP  PI  G+ G  N  +   I  ++   +   D   
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYT----PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDC--

Query:  ---------------------------------------SFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCY
                                               + +  G D   NEEK+SAMYRIENELRAMNE AATHCSFGPVGADI R EG+VIGPA SCY
Subjt:  ---------------------------------------SFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCY

Query:  EGGIFHLSIQFPSDYPLSPPHIKFLTK
        +GGIFHLSIQFPS+YPLSPP IKFLTK
Subjt:  EGGIFHLSIQFPSDYPLSPPHIKFLTK

A0A6J1KCF2 ubiquitin-conjugating enzyme E2 E3-like2.7e-3949.12Show/hide
Query:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIE------------
        M+L RL   FS+K SSS+ Y RL+T   PPLPI H     P+P   LPI   D  + +   SPPP PI  G+ G  N  +   I  ++            
Subjt:  MLLSRLRRFFSSKPSSSSAYRRLYT---PPLPIAHTHTLYPRPPSPLPIYHDDRNWSE---SPPPQPISIGNGGSGNEEKTSAIYRIE------------

Query:  --------------------------NEKEVS---TDCSFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYE
                                   + E S      + E  G D   NEEK+S+MYRIENELRAMNE AATHCSFGPVGADIFRWEGVVIGPA SCY+
Subjt:  --------------------------NEKEVS---TDCSFEPVGADIRENEEKSSAMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYE

Query:  GGIFHLSIQFPSDYPLSPPHIKFLTK
        GGIFHLSIQFPS+YPLSPP IKFLTK
Subjt:  GGIFHLSIQFPSDYPLSPPHIKFLTK

SwissProt top hitse value%identityAlignment
D3ZDK2 Ubiquitin-conjugating enzyme E2 D13.1e-1647.89Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A+ RI+ EL  +  +   HCS GPVG D+F W+  ++GP  S Y+GG+F L++ FP+DYP  PP I F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

P46595 Ubiquitin-conjugating enzyme E2 43.4e-1547.89Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A+ RI  EL  + ++  + CS GPVG D+F W+  ++GPA S Y GG+F LSI FP+DYP  PP + F T+
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

P51668 Ubiquitin-conjugating enzyme E2 D13.1e-1647.89Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A+ RI+ EL  +  +   HCS GPVG D+F W+  ++GP  S Y+GG+F L++ FP+DYP  PP I F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

P61080 Ubiquitin-conjugating enzyme E2 D13.1e-1647.89Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A+ RI+ EL  +  +   HCS GPVG D+F W+  ++GP  S Y+GG+F L++ FP+DYP  PP I F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

Q2TA10 Ubiquitin-conjugating enzyme E2 D13.1e-1647.89Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A+ RI+ EL  +  +   HCS GPVG D+F W+  ++GP  S Y+GG+F L++ FP+DYP  PP I F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

Arabidopsis top hitse value%identityAlignment
AT1G64230.1 ubiquitin-conjugating enzyme 281.8e-1445.07Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A  RI  EL+ + ++  T CS GPV  D+F W+  ++GP+ S Y GG+F ++I FP DYP  PP + F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

AT5G41700.1 ubiquitin conjugating enzyme 81.0e-1446.48Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A  RI  EL+ + ++  T CS GPV  D+F W+  ++GPA S Y GG+F ++I FP DYP  PP + F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

AT5G41700.2 ubiquitin conjugating enzyme 81.0e-1446.48Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A  RI  EL+ + ++  T CS GPV  D+F W+  ++GPA S Y GG+F ++I FP DYP  PP + F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

AT5G41700.3 ubiquitin conjugating enzyme 81.0e-1446.48Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A  RI  EL+ + ++  T CS GPV  D+F W+  ++GPA S Y GG+F ++I FP DYP  PP + F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK

AT5G41700.5 ubiquitin conjugating enzyme 81.0e-1446.48Show/hide
Query:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK
        A  RI  EL+ + ++  T CS GPV  D+F W+  ++GPA S Y GG+F ++I FP DYP  PP + F TK
Subjt:  AMYRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCTTTCCCGTCTCCGCCGTTTCTTCTCTTCAAAACCCTCTTCTTCCTCCGCCTACCGCCGCCTCTACACTCCTCCTCTTCCGATCGCCCATACACACACACTCTA
TCCCCGGCCGCCGTCTCCTCTTCCAATCTACCACGATGATCGTAACTGGTCAGAATCTCCGCCGCCACAGCCGATTTCGATCGGCAACGGCGGAAGTGGAAATGAAGAAA
AAACTAGTGCAATATATCGGATTGAGAACGAGAAGGAGGTGTCGACGGACTGCAGTTTCGAGCCGGTTGGCGCCGATATTAGGGAAAATGAAGAAAAAAGTAGTGCGATG
TATCGGATTGAGAATGAATTGAGAGCGATGAACGAGGAGGCGGCGACGCACTGCAGTTTCGGGCCGGTGGGCGCCGATATTTTCCGGTGGGAAGGGGTTGTGATTGGGCC
GGCTTGTTCTTGCTATGAAGGGGGTATTTTTCACCTTTCAATTCAATTTCCCTCCGACTACCCCTTAAGTCCTCCCCACATCAAGTTTCTAACCAAGCCTCACCTTATTC
TGAAATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCTTTCCCGTCTCCGCCGTTTCTTCTCTTCAAAACCCTCTTCTTCCTCCGCCTACCGCCGCCTCTACACTCCTCCTCTTCCGATCGCCCATACACACACACTCTA
TCCCCGGCCGCCGTCTCCTCTTCCAATCTACCACGATGATCGTAACTGGTCAGAATCTCCGCCGCCACAGCCGATTTCGATCGGCAACGGCGGAAGTGGAAATGAAGAAA
AAACTAGTGCAATATATCGGATTGAGAACGAGAAGGAGGTGTCGACGGACTGCAGTTTCGAGCCGGTTGGCGCCGATATTAGGGAAAATGAAGAAAAAAGTAGTGCGATG
TATCGGATTGAGAATGAATTGAGAGCGATGAACGAGGAGGCGGCGACGCACTGCAGTTTCGGGCCGGTGGGCGCCGATATTTTCCGGTGGGAAGGGGTTGTGATTGGGCC
GGCTTGTTCTTGCTATGAAGGGGGTATTTTTCACCTTTCAATTCAATTTCCCTCCGACTACCCCTTAAGTCCTCCCCACATCAAGTTTCTAACCAAGCCTCACCTTATTC
TGAAATTGTAA
Protein sequenceShow/hide protein sequence
MLLSRLRRFFSSKPSSSSAYRRLYTPPLPIAHTHTLYPRPPSPLPIYHDDRNWSESPPPQPISIGNGGSGNEEKTSAIYRIENEKEVSTDCSFEPVGADIRENEEKSSAM
YRIENELRAMNEEAATHCSFGPVGADIFRWEGVVIGPACSCYEGGIFHLSIQFPSDYPLSPPHIKFLTKPHLILKL