; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG06G009010 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G009010
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCG_Chr06:13910651..13911259
RNA-Seq ExpressionClCG06G009010
SyntenyClCG06G009010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW57887.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.0e-0735.52Show/hide
Query:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQI----------------AVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSS
        +GL SQLQKIKK+G+T+S++LA+IK   DK+SA+      L+Y+ +L   +                  DK  L +V+    T      RL   +  +  
Subjt:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQI----------------AVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSS

Query:  SSKFSMLPNSNPRIFNPPNSSPPF------NQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ-SSSVVRPQ
            S  PNS P I   P   P        NQ   NF+P     R Q QIC KF HIAL C++R N  YQ  PQ  +S  +PQ
Subjt:  SSKFSMLPNSNPRIFNPPNSSPPF------NQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ-SSSVVRPQ

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]4.8e-1033.69Show/hide
Query:  QLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMT
        ++Q++KKDGL+VSQ+LA+IK+ + K S+I                                      DV +LLLAY+ RLEKQ +VD+LN+VQ NVA + 
Subjt:  QLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMT

Query:  LNQNPKRLNWHSNGKSSSSKFSMLP---NSNPRIFNPP--NSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQV
        LN    R + H+      S+ S  P    + P +   P  NS PP+    P  + + R  + Q QIC K GH    C++R N  Y++
Subjt:  LNQNPKRLNWHSNGKSSSSKFSMLP---NSNPRIFNPP--NSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQV

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]3.3e-1132.65Show/hide
Query:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN
        MGL ++LQ ++KDG +VSQ+LA+IK+ +DKF+A+                                      DV SLLLAYEARL+KQ  VD+LN+ Q N
Subjt:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN

Query:  VAQMTLNQNPKR----LNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHN-PFYQVAPQS
        +  ++L  N KR     ++ ++ K S     +    +  I   P S   +  P+P+        + Q QIC K GH A VC++R N  ++  +PQ+
Subjt:  VAQMTLNQNPKR----LNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHN-PFYQVAPQS

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]4.8e-1037.86Show/hide
Query:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN
        MG  SQLQKIKKDGLTVSQ+LAQIKD  D F+AI                                      DV +LL+ Y++RLEKQ A D L L+Q N
Subjt:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN

Query:  VAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPP
        VA +++N   +   W  + +SS    +    S P I   P
Subjt:  VAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPP

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]1.6e-1335.12Show/hide
Query:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN
        M L ++LQKI+KD L++SQ+L+QIKD +DKFS +                                      DV SLLL+YEA+LEKQ A+D LN+ Q  
Subjt:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN

Query:  VAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNS---SPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQSSSVVRP
        +++++   N KR N      + SS     PN +P + +  NS    P FN+  P  +P S   +PQ QI  KFGHI   CH       Q+A  +   + P
Subjt:  VAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNS---SPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQSSSVVRP

Query:  QAHLN
        QAH++
Subjt:  QAHLN

TrEMBL top hitse value%identityAlignment
A0A438FD18 Retrovirus-related Pol polyprotein from transposon RE14.9e-0835.52Show/hide
Query:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQI----------------AVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSS
        +GL SQLQKIKK+G+T+S++LA+IK   DK+SA+      L+Y+ +L   +                  DK  L +V+    T      RL   +  +  
Subjt:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQI----------------AVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSS

Query:  SSKFSMLPNSNPRIFNPPNSSPPF------NQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ-SSSVVRPQ
            S  PNS P I   P   P        NQ   NF+P     R Q QIC KF HIAL C++R N  YQ  PQ  +S  +PQ
Subjt:  SSKFSMLPNSNPRIFNPPNSSPPF------NQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ-SSSVVRPQ

A0A6J1D6N7 uncharacterized protein LOC1110174382.3e-1033.69Show/hide
Query:  QLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMT
        ++Q++KKDGL+VSQ+LA+IK+ + K S+I                                      DV +LLLAY+ RLEKQ +VD+LN+VQ NVA + 
Subjt:  QLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMT

Query:  LNQNPKRLNWHSNGKSSSSKFSMLP---NSNPRIFNPP--NSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQV
        LN    R + H+      S+ S  P    + P +   P  NS PP+    P  + + R  + Q QIC K GH    C++R N  Y++
Subjt:  LNQNPKRLNWHSNGKSSSSKFSMLP---NSNPRIFNPP--NSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQV

A0A6J1DQX7 uncharacterized protein LOC1110223151.6e-1132.65Show/hide
Query:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN
        MGL ++LQ ++KDG +VSQ+LA+IK+ +DKF+A+                                      DV SLLLAYEARL+KQ  VD+LN+ Q N
Subjt:  MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVN

Query:  VAQMTLNQNPKR----LNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHN-PFYQVAPQS
        +  ++L  N KR     ++ ++ K S     +    +  I   P S   +  P+P+        + Q QIC K GH A VC++R N  ++  +PQ+
Subjt:  VAQMTLNQNPKR----LNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHN-PFYQVAPQS

A0A7J0E8R3 Uncharacterized protein1.0e-0531.55Show/hide
Query:  LGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVA
        L + LQ IKKDGLT   ++ + +   +  ++I                                      +V SLLL+Y+ARLE+Q A D L+ +Q N+A
Subjt:  LGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVA

Query:  QMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAP
         +T  Q PK  N  +N   +S+ +     S+PR     N +P ++   PN  P+S   RP+ QIC K GH A  C++R N  YQ  P
Subjt:  QMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAP

A5BPS3 Uncharacterized protein3.5e-0631.58Show/hide
Query:  KIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVA------
        KIKK+G+T+S++LA+IK+  DK+SA+                                      +V SLL  Y   LE++    +L   QVN+       
Subjt:  KIKKDGLTVSQHLAQIKDASDKFSAI--------------------------------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVA------

Query:  QMTLNQNPKRLNWHSNGKSS------SSKFSMLPNSNPRIFNPPNSSPPFN------QPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ
        +   NQ P    +  N  SS      +   S  PNS P I   P   P  +      Q   NF P     RPQ QIC KFGH+AL C++R N  YQ  PQ
Subjt:  QMTLNQNPKRLNWHSNGKSS------SSKFSMLPNSNPRIFNPPNSSPPFN------QPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ

Query:  -SSSVVRPQ
          +S  +PQ
Subjt:  -SSSVVRPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGATGTCTG
CAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAAC
GATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAA
CCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTA
CCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGATGTCTG
CAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAAC
GATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAA
CCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTA
CCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA
Protein sequenceShow/hide protein sequence
MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQ
PRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQSSSVVRPQAHLN