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ClCG06G009120 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G009120
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCG_Chr06:14735848..14736176
RNA-Seq ExpressionClCG06G009120
SyntenyClCG06G009120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]1.2e-0638.52Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      EE
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ L   V  L+ FVE ELH+L
Subjt:  VRSLTQEVANLRKFVERELHDL

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]9.3e-0739.34Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      +E
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        +R L   V  L+ FVE ELHDL
Subjt:  VRSLTQEVANLRKFVERELHDL

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]7.1e-0738.52Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      +E
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ L   V  L+ FVE ELHDL
Subjt:  VRSLTQEVANLRKFVERELHDL

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]3.2e-0739.34Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      EE
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ LT  V  L+ FVE ELH+L
Subjt:  VRSLTQEVANLRKFVERELHDL

TYK18079.1 uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]7.1e-0738.52Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      +E
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ L   V  L+ FVE ELHDL
Subjt:  VRSLTQEVANLRKFVERELHDL

TrEMBL top hitse value%identityAlignment
A0A5A7TAA5 Uncharacterized protein5.9e-0738.52Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      EE
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ L   V  L+ FVE ELH+L
Subjt:  VRSLTQEVANLRKFVERELHDL

A0A5A7TFP3 Retrotrans_gag domain-containing protein3.4e-0738.52Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      +E
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ L   V  L+ FVE ELHDL
Subjt:  VRSLTQEVANLRKFVERELHDL

A0A5A7THC0 Reverse transcriptase domain-containing protein4.5e-0739.34Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      +E
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        +R L   V  L+ FVE ELHDL
Subjt:  VRSLTQEVANLRKFVERELHDL

A0A5A7VEX8 Polyprotein1.5e-0739.34Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      EE
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ LT  V  L+ FVE ELH+L
Subjt:  VRSLTQEVANLRKFVERELHDL

A0A5D3D3V4 Retrotrans_gag domain-containing protein3.4e-0738.52Show/hide
Query:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE
        M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQLAVGRLSE +EEL+ ++            D G      +E
Subjt:  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEE

Query:  VRSLTQEVANLRKFVERELHDL
        ++ L   V  L+ FVE ELHDL
Subjt:  VRSLTQEVANLRKFVERELHDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAA
GAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGG
ACGATGACGGGAGAAGAGGTAAGATCTCTTACTCAAGAAGTAGCCAACCTAAGGAAGTTCGTGGAAAGGGAACTCCACGATCTTCGCAAAGAGGTCGACGACATT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAA
GAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGG
ACGATGACGGGAGAAGAGGTAAGATCTCTTACTCAAGAAGTAGCCAACCTAAGGAAGTTCGTGGAAAGGGAACTCCACGATCTTCGCAAAGAGGTCGACGACATT
TGA
Protein sequenceShow/hide protein sequence
MATEEARRSSVERVQVEGLVTQGRRRDDARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQKNDHGAWTMTGEEVRSLTQEVANLRKFVERELHDLRKEVDDI