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ClCG06G009600 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G009600
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein
Genome locationCG_Chr06:16625941..16627599
RNA-Seq ExpressionClCG06G009600
SyntenyClCG06G009600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032570.1 protein SAND [Cucumis melo var. makuwa]3.3e-0834.04Show/hide
Query:  LNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP--------------------N
        LN  ++ +L  + Q +    GE GL +LK +N ALL KW+WRF++E +S + +V  SIH S  F  H+ GK + SL+SP                     
Subjt:  LNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP--------------------N

Query:  GKQKNFFLEGPRLNGVVLKDMFPSLAGLVDDLEASVLSYWD
        G +  F+L+ P +N + L   FP L  +    + SV +YWD
Subjt:  GKQKNFFLEGPRLNGVVLKDMFPSLAGLVDDLEASVLSYWD

KAA0043277.1 hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa]2.0e-0555.36Show/hide
Query:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP
        GLG +K QN ALL KW WRF  E  S +RQV  S+H    FD H+ GK N  LKSP
Subjt:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP

KAA0057306.1 uncharacterized protein E6C27_scaffold280G001490 [Cucumis melo var. makuwa]6.2e-0755.36Show/hide
Query:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP
        G G L+++N ALL KW WRF+NE NS + QV  SIHG S+F  H+KG  + SL SP
Subjt:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP

TrEMBL top hitse value%identityAlignment
A0A2U1Q644 RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein9.0e-0434.94Show/hide
Query:  GEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSS-QFDCHSKGKGNLSLKSPNGKQKNFFLEGPRLNGVVLKDMF
        G  G+G +K +N  LL KW+WRF+NE  + +R++   IHGSS  FD     K N +  S  G        G  LN ++++ ++
Subjt:  GEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSS-QFDCHSKGKGNLSLKSPNGKQKNFFLEGPRLNGVVLKDMF

A0A5A7SP09 Vacuolar fusion protein MON1 homolog1.6e-0834.04Show/hide
Query:  LNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP--------------------N
        LN  ++ +L  + Q +    GE GL +LK +N ALL KW+WRF++E +S + +V  SIH S  F  H+ GK + SL+SP                     
Subjt:  LNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP--------------------N

Query:  GKQKNFFLEGPRLNGVVLKDMFPSLAGLVDDLEASVLSYWD
        G +  F+L+ P +N + L   FP L  +    + SV +YWD
Subjt:  GKQKNFFLEGPRLNGVVLKDMFPSLAGLVDDLEASVLSYWD

A0A5A7TN98 Uncharacterized protein9.6e-0655.36Show/hide
Query:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP
        GLG +K QN ALL KW WRF  E  S +RQV  S+H    FD H+ GK N  LKSP
Subjt:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP

A0A5A7UT27 Uncharacterized protein3.0e-0755.36Show/hide
Query:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP
        G G L+++N ALL KW WRF+NE NS + QV  SIHG S+F  H+KG  + SL SP
Subjt:  GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATCCAAAGATCCAACATGAGAGATAAAAGCTTCCCAACTTCGACAAATCTATTGAATGGAAAAATTCGCATAGACTTAGATAGAGAACACCAAGCGGAAGCCTC
AAATCATGGCGAGCATGGCCTTGGTAGATTGAAGCATCAAAATTTTGCTTTGTTAGAAAAATGGCAATGGCGATTTGTGAACGAAACTAATTCTTCTTTTAGACAAGTCA
ATGGTAGCATTCATGGATCCAGTCAATTTGATTGCCATTCGAAAGGCAAGGGCAATCTAAGTCTCAAGAGTCCCAATGGCAAGCAAAAGAACTTCTTTTTGGAAGGACCC
CGGTTGAATGGAGTTGTTTTAAAGGACATGTTTCCTAGTTTAGCTGGCCTTGTTGATGATTTAGAAGCTTCAGTTCTCTCTTATTGGGATGTTACCACTCCCTTGGAATT
TTATATTTTGAAGATTTCTAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATCCAAAGATCCAACATGAGAGATAAAAGCTTCCCAACTTCGACAAATCTATTGAATGGAAAAATTCGCATAGACTTAGATAGAGAACACCAAGCGGAAGCCTC
AAATCATGGCGAGCATGGCCTTGGTAGATTGAAGCATCAAAATTTTGCTTTGTTAGAAAAATGGCAATGGCGATTTGTGAACGAAACTAATTCTTCTTTTAGACAAGTCA
ATGGTAGCATTCATGGATCCAGTCAATTTGATTGCCATTCGAAAGGCAAGGGCAATCTAAGTCTCAAGAGTCCCAATGGCAAGCAAAAGAACTTCTTTTTGGAAGGACCC
CGGTTGAATGGAGTTGTTTTAAAGGACATGTTTCCTAGTTTAGCTGGCCTTGTTGATGATTTAGAAGCTTCAGTTCTCTCTTATTGGGATGTTACCACTCCCTTGGAATT
TTATATTTTGAAGATTTCTAAAAGATGA
Protein sequenceShow/hide protein sequence
MQIQRSNMRDKSFPTSTNLLNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSPNGKQKNFFLEGP
RLNGVVLKDMFPSLAGLVDDLEASVLSYWDVTTPLEFYILKISKR