; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG06G009630 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G009630
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr06:16651083..16660798
RNA-Seq ExpressionClCG06G009630
SyntenyClCG06G009630
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0034645 - cellular macromolecule biosynthetic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043586.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-0959.02Show/hide
Query:  IALEHNIANPFTKVVSAKVFEGHLESL--------DFPLICMGESGRLLTQYAYHLGDKID
        IA EHNI  PFTK ++ KVFEGHLESL        D PLIC GESG++   YAYH G+KI+
Subjt:  IALEHNIANPFTKVVSAKVFEGHLESL--------DFPLICMGESGRLLTQYAYHLGDKID

KAA0056660.1 GTP-binding protein [Cucumis melo var. makuwa]1.2e-0945.95Show/hide
Query:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI
        ++ R  +K  I   +DHFPL+LE GA+  GPS +RFCNSW+ IKEC   I+ +L      GWAGF +  +L K+
Subjt:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI

XP_038884535.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]1.4e-1045.95Show/hide
Query:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI
        ED R  ++   I  +DHFPL+ E GA   GPSP+RFCNSW+K KEC +II+ S  ++    WAGF +  +L ++
Subjt:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI

XP_038884536.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]1.4e-1045.95Show/hide
Query:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI
        ED R  ++   I  +DHFPL+ E GA   GPSP+RFCNSW+K KEC +II+ S  ++    WAGF +  +L ++
Subjt:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI

XP_038884537.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]1.4e-1045.95Show/hide
Query:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI
        ED R  ++   I  +DHFPL+ E GA   GPSP+RFCNSW+K KEC +II+ S  ++    WAGF +  +L ++
Subjt:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI

TrEMBL top hitse value%identityAlignment
A0A5A7TNG3 Gag/pol protein7.7e-1059.02Show/hide
Query:  IALEHNIANPFTKVVSAKVFEGHLESL--------DFPLICMGESGRLLTQYAYHLGDKID
        IA EHNI  PFTK ++ KVFEGHLESL        D PLIC GESG++   YAYH G+KI+
Subjt:  IALEHNIANPFTKVVSAKVFEGHLESL--------DFPLICMGESGRLLTQYAYHLGDKID

A0A5A7UNL3 GTP-binding protein5.9e-1045.95Show/hide
Query:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI
        ++ R  +K  I   +DHFPL+LE GA+  GPS +RFCNSW+ IKEC   I+ +L      GWAGF +  +L K+
Subjt:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKI

A0A5A7UR38 Transposon TX1 uncharacterized2.5e-0850Show/hide
Query:  NDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKIAS
        +DH P++LE GA   GPSP+RFCNSW+  K C +II  SLT      W GF I  KL  + S
Subjt:  NDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCKIAS

A0A5D3BHE3 Uncharacterized protein3.6e-0743.28Show/hide
Query:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTI
        E+ R  +K   I  +DHFPL+LE G++  GPSP+RF NSW+   EC +II+    +     WAGF +
Subjt:  EDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTI

A0A5D3CSF2 Gag/pol protein1.0e-0653.85Show/hide
Query:  IALEHNIANPFTKVVSAKVFEGHLESL--------DFPLICMGESGRLLTQYAYHLGDKID-GAE
        IA EHNIA+PFTK ++AKVFEGHLESL        D PLIC GESG+++        +K + GAE
Subjt:  IALEHNIANPFTKVVSAKVFEGHLESL--------DFPLICMGESGRLLTQYAYHLGDKID-GAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTGGCGCTGCAATGCTGGTCTATAGCATCGCAGTGCTGCCAATTATGGAAAGAGAGCGCCCAGCGCTCAACGCCGCAGCGCTTGCTGTGTTTTCGCCAGCAAA
AACCCTCGGGGAAAAGTGCTGCTACGCCATGACTTTAGGGGCATTTTGGCCATTTTGGAGTTCTCTTTCCCGGTTAATGACATGGAACTCGGTTTCGATCGCTTTGGAGC
ATAACATTGCTAATCCATTTACGAAGGTTGTCTCGGCTAAAGTGTTTGAGGGTCATCTAGAGAGTTTAGATTTTCCTTTAATTTGTATGGGTGAAAGTGGTCGTTTGTTG
ACTCAATATGCCTACCATCTTGGGGACAAGATCGATGGTGCTGAAATTCATCAAGAATTGAAGGAGAATTTGGAGCTTCAAGGATCTCTTGGAAAAAGAAGACTACAAGG
AGAAGACTATCGGTTCAAGAAGAAGATTGAAATTATAGTCGACAATGACCACTTCCCCTTGATCCTTGAAGTTGGAGCAGTTTTTTGTGGACCTTCACCTTATAGATTTT
GCAACAGTTGGATGAAGATTAAAGAGTGCTTGAAAATCATTCAAACATCCTTGACTCTTGAACAATCAGATGGTTGGGCTGGTTTTACAATCAGTATCAAGCTCTGCAAG
ATTGCTTCCCAAAGCTCTTTAGAATTGCTTCATCCCCAAAGGCCAGTGTCAATGATTATTGAAACTTGGTTACTCAATCCTAGAATCTATTACTCCGCAGGAAACTCAAG
GAAAAGGAATTTTGTGAAGTTCAAGGACTACTTAGTACAATCGAAGCATAAGCTTCAGAGCAAATGTTTATCACCATCAGTCTGCTCCCTATGTTCTACTAATGGTGAAG
ATGTTCAACATTTGTTATTTGATTATTCTTATTCAAGAAAGTACTGGTGGAAATTATTCGATTGCTTCAATGTGAATTGGGTCCTCGGGAATTCAGCAAGAGAAAACATA
CTGCAATTATTAGTCGATCATTCTCTTACTTCTAGATCTCAACTTCTATGGTCAAACCGTGTTTTTCATGATACATCTAAAGATTGGTTAGATAGATGGGGAGCAGCCCG
TCTTTTAGCTTCTTCTTGGAGTTCACAATACAAGTTGCAAGGAAGAGGAAAAGAGTTCGAGATAGTCGTGGTGTCCTTCGAATTCCGACGTGAAAGCCAAGGAGATCGTG
ACGGTGCTACCTCAATCAAGAGCCTACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTGGCGCTGCAATGCTGGTCTATAGCATCGCAGTGCTGCCAATTATGGAAAGAGAGCGCCCAGCGCTCAACGCCGCAGCGCTTGCTGTGTTTTCGCCAGCAAA
AACCCTCGGGGAAAAGTGCTGCTACGCCATGACTTTAGGGGCATTTTGGCCATTTTGGAGTTCTCTTTCCCGGTTAATGACATGGAACTCGGTTTCGATCGCTTTGGAGC
ATAACATTGCTAATCCATTTACGAAGGTTGTCTCGGCTAAAGTGTTTGAGGGTCATCTAGAGAGTTTAGATTTTCCTTTAATTTGTATGGGTGAAAGTGGTCGTTTGTTG
ACTCAATATGCCTACCATCTTGGGGACAAGATCGATGGTGCTGAAATTCATCAAGAATTGAAGGAGAATTTGGAGCTTCAAGGATCTCTTGGAAAAAGAAGACTACAAGG
AGAAGACTATCGGTTCAAGAAGAAGATTGAAATTATAGTCGACAATGACCACTTCCCCTTGATCCTTGAAGTTGGAGCAGTTTTTTGTGGACCTTCACCTTATAGATTTT
GCAACAGTTGGATGAAGATTAAAGAGTGCTTGAAAATCATTCAAACATCCTTGACTCTTGAACAATCAGATGGTTGGGCTGGTTTTACAATCAGTATCAAGCTCTGCAAG
ATTGCTTCCCAAAGCTCTTTAGAATTGCTTCATCCCCAAAGGCCAGTGTCAATGATTATTGAAACTTGGTTACTCAATCCTAGAATCTATTACTCCGCAGGAAACTCAAG
GAAAAGGAATTTTGTGAAGTTCAAGGACTACTTAGTACAATCGAAGCATAAGCTTCAGAGCAAATGTTTATCACCATCAGTCTGCTCCCTATGTTCTACTAATGGTGAAG
ATGTTCAACATTTGTTATTTGATTATTCTTATTCAAGAAAGTACTGGTGGAAATTATTCGATTGCTTCAATGTGAATTGGGTCCTCGGGAATTCAGCAAGAGAAAACATA
CTGCAATTATTAGTCGATCATTCTCTTACTTCTAGATCTCAACTTCTATGGTCAAACCGTGTTTTTCATGATACATCTAAAGATTGGTTAGATAGATGGGGAGCAGCCCG
TCTTTTAGCTTCTTCTTGGAGTTCACAATACAAGTTGCAAGGAAGAGGAAAAGAGTTCGAGATAGTCGTGGTGTCCTTCGAATTCCGACGTGAAAGCCAAGGAGATCGTG
ACGGTGCTACCTCAATCAAGAGCCTACAGTAG
Protein sequenceShow/hide protein sequence
METGAAMLVYSIAVLPIMERERPALNAAALAVFSPAKTLGEKCCYAMTLGAFWPFWSSLSRLMTWNSVSIALEHNIANPFTKVVSAKVFEGHLESLDFPLICMGESGRLL
TQYAYHLGDKIDGAEIHQELKENLELQGSLGKRRLQGEDYRFKKKIEIIVDNDHFPLILEVGAVFCGPSPYRFCNSWMKIKECLKIIQTSLTLEQSDGWAGFTISIKLCK
IASQSSLELLHPQRPVSMIIETWLLNPRIYYSAGNSRKRNFVKFKDYLVQSKHKLQSKCLSPSVCSLCSTNGEDVQHLLFDYSYSRKYWWKLFDCFNVNWVLGNSARENI
LQLLVDHSLTSRSQLLWSNRVFHDTSKDWLDRWGAARLLASSWSSQYKLQGRGKEFEIVVVSFEFRRESQGDRDGATSIKSLQ